PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000880063
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 145aa    MW: 16210.8 Da    PI: 5.0862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000880063genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-191666255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr ++ +g+++AeIrd +    + +r +lg+f taeeAa+a+++a+ +++g
  MDP0000880063 16 KYRGVRTRP-WGKFAAEIRDSTR---QgARLWLGTFNTAEEAARAYDRAAFSMRG 66
                   8*****999.**********322...24*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.26E-291675No hitNo description
PfamPF008471.1E-141666IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-311675IPR001471AP2/ERF domain
SMARTSM003805.0E-351680IPR001471AP2/ERF domain
PROSITE profilePS5103223.2351674IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-231676IPR016177DNA-binding domain
PRINTSPR003674.9E-111728IPR001471AP2/ERF domain
PRINTSPR003674.9E-114056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MERGGKDKEE GQKDVKYRGV RTRPWGKFAA EIRDSTRQGA RLWLGTFNTA EEAARAYDRA  60
AFSMRGPLAI LNFPIEYDLK DADQSAAAVS SSSSSLSSSS RPHNVTRTES GREIFEFECL  120
DDSVLEDLLD FDNHTKTNEE KQIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-3511241114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687651e-141HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028959491.11e-103ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC52e-41ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498JTA91e-102A0A498JTA9_MALDO; Uncharacterized protein
STRINGXP_009354933.12e-83(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.15e-31ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]