PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000874562
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WOX
Protein Properties Length: 191aa    MW: 21649.1 Da    PI: 11.0679
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000874562genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.41e-07154189236
                    T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHH CS
       Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkk 36 
                    ++R+++++eq+++Le+ F+    +p ++e++++ ++
  MDP0000874562 154 KPRWNPKPEQIRILEAIFNFgVVNPPRDEIRKIRAQ 189
                    89*****************88***********9877 PP
2Wus_type_Homeobox46.96.5e-16153189238
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritae 38 
                        +++RW+P+peQi+iLe++++ G+++P+++ei++i+a+
      MDP0000874562 153 PKPRWNPKPEQIRILEAIFNFGVVNPPRDEIRKIRAQ 189
                        689********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000463.8E-5154189IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MDIDCRAVAD VAVSKFKKVI FLLGRTRTGH ARFQQAPLTL SFRSSSQTQN QSQEILVKHV  60
PLPLESTKVY HATSIQQIPL TSPQPCRPRR RRQIHPPLLC GSNHRGLEGQ VLLGKSAALP  120
PVSLSELGYK NPFAQLKNPR KETHQYLHYS PEPKPRWNPK PEQIRILEAI FNFGVVNPPR  180
DEIRKIRAQM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.130651e-96bud| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM8599015e-96HM859901.1 Malus x domestica WRKY disease resistance protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-20homeobox-3