PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000871080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | AP2 | ||||||||
Protein Properties | Length: 828aa MW: 90744.9 Da PI: 6.8872 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 34.8 | 4.1e-11 | 356 | 412 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g MDP0000871080 356 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 412 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.4 | 9.9e-15 | 455 | 506 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g MDP0000871080 455 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 506 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-8 | 356 | 412 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-14 | 356 | 422 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 3.52E-19 | 356 | 422 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.0E-11 | 357 | 421 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 357 | 420 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 357 | 426 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-6 | 358 | 369 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-9 | 455 | 506 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-17 | 455 | 515 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.83E-24 | 455 | 514 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.4E-18 | 456 | 514 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 456 | 514 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-33 | 456 | 520 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-6 | 496 | 516 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 828 aa Download sequence Send to blast |
MGSMNWLGFS LSPQEVVPAD PMISEGADRR RHQHGQDLHD LSAQTTTPVS RFGFKYSDEI 60 SGTDASGTDA SGDCFDLTYS HDDSSATTTA PKHHSLNHLP PSFGMLHQAA FNSQGADWNM 120 NSSDSTNYKI TSDHLSMLMG RSNSCNTLNL ENHHNRHHQQ PKLENFLGRD SFIADHHDHI 180 QSSTNSAHAY NNNTASTNNT DYIFSRTASS LQLPLESAGP TDVINGDGAG VKINNNSSSS 240 NIGLSMIKTW LRNQPAPQQQ EMNKNDINGI GVSNTSTSTT ASTTSAQTLS LSMSTAGATT 300 AGDQTCSSDR DNNKQAIIRT AAVTTTQSGI DSQTSTSTAI EAVPRKSIDT FGQRTSIYRG 360 VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA RAYDLAALKY WGTTTTTNFP 420 ISNYEKEVDE MKHMTRQEFV ASLRRKSSGF SRGASIYRGV TRHHQHGRWQ ARIGRVAGNK 480 DLYLGTFSTQ EEAAEAYDIA AIKFRGLNAV TNFDMTRYDV KSILESSTLP IGGAAKRLKD 540 VERAHHQHQH EMTLLADGHH RSTTDDQREK LMMMTRSTST SNCHDQYHQQ LINGDHHGMS 600 VNNVWPTLAL TQAAATAAHQ AVAPPFGTSY YSAVPYNSNG GQRVWCKQEQ DTNSQSFYQP 660 QDYHHQDLHH HQLLQLGSTH NFFQPVNLMG NSTTTDSMEH SSGSNSVIYN GTTAGDHGGY 720 IIPMGTVIAN GHENNSNAFG DGSSDHDQVK TALSYENVFG SSSTTTAADA YNHTKSLYYL 780 PVQAPQSSSV SSVGVAKGSS EYNNWVPIAV PTSTNNMAPF TVWNDTN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC429673 | 1e-163 | KC429673.1 Rosa canina BBM1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008355861.1 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 isoform X2 | ||||
TrEMBL | A0A498IKD5 | 0.0 | A0A498IKD5_MALDO; Uncharacterized protein | ||||
STRING | XP_008388822.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8186 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-124 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000871080 |