PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000870890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 94aa MW: 10548.2 Da PI: 10.7272 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 15 | 37 | 3 | 25 |
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+f+++ G C++ drC++ H MDP0000870890 15 RVNCPFYFKIGACRHSDRCSRLH 37 789******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.216 | 12 | 40 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-6 | 15 | 37 | IPR000571 | Zinc finger, CCCH-type |
PRINTS | PR01848 | 1.0E-14 | 18 | 37 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.0E-14 | 37 | 57 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 94 aa Download sequence Send to blast |
MAKHLASIFG TEKXRVNCPF YFKIGACRHS DRCSRLHTKP SVSPTILLSN IMYLLELLDR 60 RARPTLTTQI LSPLNHLHNP QVWGFITKGL GIS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4yh8_A | 5e-19 | 1 | 51 | 1 | 51 | Splicing factor U2AF 23 kDa subunit |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Necessary for the splicing of pre-mRNA. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002528581.1 | 2e-29 | splicing factor U2af small subunit B | ||||
Refseq | XP_012066503.1 | 2e-29 | splicing factor U2af small subunit B | ||||
Refseq | XP_015580499.1 | 2e-29 | splicing factor U2af small subunit B | ||||
Refseq | XP_020533185.1 | 2e-29 | splicing factor U2af small subunit B | ||||
Swissprot | Q9ZQW8 | 1e-28 | U2AFA_ORYSJ; Splicing factor U2af small subunit A | ||||
TrEMBL | D5ABW9 | 2e-28 | D5ABW9_PICSI; Uncharacterized protein | ||||
STRING | XP_002528581.1 | 6e-29 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G44785.1 | 1e-27 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000870890 |
Publications ? help Back to Top | |||
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