PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000869725
Common NameC2H2L15
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C2H2
Protein Properties Length: 281aa    MW: 30643.7 Da    PI: 7.9932
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000869725genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  MDP0000869725 109 FPCNYCQRKFYSSQALGGHQNAH 131
                    89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.39E-6106136No hitNo description
PROSITE profilePS5015711.281109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEPARNSETN IFSVAEVPPC PNTPLQDPKE TKQKLRVEED EEAMKDQEKQ KKPXIRIDLE  60
ASDSDSNRGF SFDNPELNLL ESLETGSSEG TTTTTTTALV SDAAEPRVFP CNYCQRKFYS  120
SQALGGHQNA HKRERTLAKR GQRMLGSHIT ASAAGXGYPY YSSLASLPLH GGAFRALDIQ  180
AHSMIHKPSS MMPSSAIRFG SSYGHRSFRS RPIFDQQPTV GKLGVAAARG GGGAGRFDVA  240
KSNMVSQGNE EIGKCWLGND SRFKSSSDQE EMKLDLSLKL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315907.10.0zinc finger protein 3-like
TrEMBLD9ZIS40.0D9ZIS4_MALDO; C2H2L domain class transcription factor
STRINGXP_008378820.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14393172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25160.15e-36zinc finger protein 3