PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000869720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 438aa MW: 47947 Da PI: 7.4144 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 46.4 | 8.5e-15 | 26 | 56 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 e+A+Pk+il+lm+v+ Lt+e+v+SHLQkYRl MDP0000869720 26 EEAVPKKILDLMNVEKLTRENVASHLQKYRL 56 57****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-15 | 25 | 61 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-8 | 26 | 60 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-13 | 26 | 56 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MSASLTPIYG EAALKSRTLD LPFMGEEAVP KKILDLMNVE KLTRENVASH LQKYRLYLKR 60 ISCVANQQAN MVAALGTSDS SYLRTASMNG VGNYHALTGP AQFHNNGYRS FPPNGMIGRL 120 NTPAGVGLHC LPSSGMFQLG HAQNPSNSIN DQPVMFPGNR NGNMLPAHLE LDQQHSRGST 180 YDAPIYPNSS GFTDGKVTNR SNDPFGLTDN TLLRHTQDSE VGRNHVMLQS SVSMPSLKPE 240 LLPSFLDHRR LNDNWPTAAQ SSAFRSNSFS ARDSFKQPTL LDSRIGMQVP ASTMSNNSGP 300 TINNDLFMGW DEPKQDSPFR PDVMCSSMNN LMPVNDNVAP FDQNLDARSS AFQRNSDFNS 360 IGQPDFLDVE ISTMDAPLKL KQQGYLMDQR KPQGGYVPHN AGSLDELVSS MMKQLLGTLL 420 AHLIAVNILV KGDKAKS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.8044 | 0.0 | bud| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008378770.1 | 0.0 | two-component response regulator ARR12-like isoform X2 | ||||
TrEMBL | A0A498HVB0 | 0.0 | A0A498HVB0_MALDO; Two-component response regulator | ||||
STRING | XP_008378763.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-32 | response regulator 12 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000869720 |