PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000866509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 1042aa MW: 113276 Da PI: 5.6793 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 537 | 557 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+++ G C+ Gd+Ck++H+ MDP0000866509 537 YCRHYLN-GKCNLGDQCKYSHD 557 6**9999.*************7 PP | |||||||
2 | zf-CCCH | 18.3 | 4e-06 | 591 | 611 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 lC++f +G+C +Gd+C F+H MDP0000866509 591 LCHHFKDNGFCGRGDSCLFSH 611 8******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.638 | 532 | 559 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 532 | 557 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.1E-5 | 533 | 558 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-4 | 536 | 557 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.718 | 561 | 585 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.041 | 561 | 587 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.122 | 586 | 614 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.12 | 589 | 613 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1042 aa Download sequence Send to blast |
MEENKIETER PSQTPIVFPP RRRRHLNSGT YRTLVRIFSH FDESQHLVSD QNVPQELNRD 60 NGNNESVQEA EKEVPXNVEL VGPDGAKGRV ADECCNGNGF RERIEQIESL LSVEENEDFS 120 GLEDTIGIEN ILAIDLKDMG YFPEQMLVDE PELVVKGNCE PSAASLDQNQ NGXDKAALLT 180 NEEEHVETVT SQDSVQMVSV SHGSSLKTVE LTESLNPRES TEQKHSLSKT SALDVEPIMQ 240 LESMELQTPV SAEGAIELSI PITEVGAIKE TEIFSQNVPE AFDFSLNKDM VAEASKPTDY 300 SKDKSLLPET NSLEVVLEMP EKFKETEKPV CDITAMSSTN HTDDGDIEEG EISGDDGMDG 360 RPSDELLQDT VVLGEQKVHK GQISKDVIDR KEQLCEEVNY KDFGSSSFLV DVVEDGKIGR 420 GVELRESRRT DMVCRPGVVQ GQNXSDSHPL LDGGRIEMKD NRVEMGVDWS GAGNHGTASE 480 EKWDAGACNK RKRGPPNKEK KERKKAKERK KRAEKNRELG VKRLKLQPLQ KPKPVAYCRH 540 YLNGKCNLGD QCKYSHDTVP LTKSTPCGKF ARNECMKGDD CGYDHDLSKY LCHHFKDNGF 600 CGRGDSCLFS HKMPSKEESE TTACKPELKP PMVQSNSRSQ QVNIGGASQQ NVHALGFSTG 660 IHSRNNTKQN VTENVLKKPE LATKGISFPS VENSSLVHSS MSKQGGVTPD RNTGTKAGSQ 720 IDQSPFSSIQ NSNEILKRTP VTTPKGINFL SFAKASPDAA RGKSQVSHQT SPGVSETVQN 780 SNGMLKSDKT AASLGTSFNP FGKCSVASPT GGQNLNAMLQ VNLPAASHRT NFNPFGNSSL 840 AGSGSDQNLK GIQPAESQGT SFNPFRKSSV TSSSSDQNLN GMLQNNQPAA SQGTSFNPFG 900 KSSVTSFSSD QNLRGILQAH QPSASQGTSL NPFEKSSVSS SSTVNPDSLT SCWGNGSNRD 960 SRESQNTADK PQNSSAVSLR LPPSPLTSGQ SSDHVASKFC KGTANSFQRG LFSTLAFAAK 1020 YRAQNMNQSI GSTDAQVDKG N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 490 | 511 | RKRGPPNKEKKERKKAKERKKR |
2 | 502 | 524 | RKKAKERKKRAEKNRELGVKRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028949999.1 | 0.0 | uncharacterized protein LOC103400820 | ||||
TrEMBL | A0A498I015 | 0.0 | A0A498I015_MALDO; Uncharacterized protein | ||||
STRING | XP_008337718.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6650 | 23 | 23 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000866509 |