PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000866509
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 1042aa    MW: 113276 Da    PI: 5.6793
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000866509genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-06537557526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     Cr+++  G C+ Gd+Ck++H+
  MDP0000866509 537 YCRHYLN-GKCNLGDQCKYSHD 557
                    6**9999.*************7 PP

2zf-CCCH18.34e-06591611525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    lC++f  +G+C +Gd+C F+H
  MDP0000866509 591 LCHHFKDNGFCGRGDSCLFSH 611
                    8******************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.638532559IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6532557IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-5533558IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-4536557IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.718561585IPR000571Zinc finger, CCCH-type
SMARTSM003560.041561587IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.122586614IPR000571Zinc finger, CCCH-type
SMARTSM003560.12589613IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MEENKIETER PSQTPIVFPP RRRRHLNSGT YRTLVRIFSH FDESQHLVSD QNVPQELNRD  60
NGNNESVQEA EKEVPXNVEL VGPDGAKGRV ADECCNGNGF RERIEQIESL LSVEENEDFS  120
GLEDTIGIEN ILAIDLKDMG YFPEQMLVDE PELVVKGNCE PSAASLDQNQ NGXDKAALLT  180
NEEEHVETVT SQDSVQMVSV SHGSSLKTVE LTESLNPRES TEQKHSLSKT SALDVEPIMQ  240
LESMELQTPV SAEGAIELSI PITEVGAIKE TEIFSQNVPE AFDFSLNKDM VAEASKPTDY  300
SKDKSLLPET NSLEVVLEMP EKFKETEKPV CDITAMSSTN HTDDGDIEEG EISGDDGMDG  360
RPSDELLQDT VVLGEQKVHK GQISKDVIDR KEQLCEEVNY KDFGSSSFLV DVVEDGKIGR  420
GVELRESRRT DMVCRPGVVQ GQNXSDSHPL LDGGRIEMKD NRVEMGVDWS GAGNHGTASE  480
EKWDAGACNK RKRGPPNKEK KERKKAKERK KRAEKNRELG VKRLKLQPLQ KPKPVAYCRH  540
YLNGKCNLGD QCKYSHDTVP LTKSTPCGKF ARNECMKGDD CGYDHDLSKY LCHHFKDNGF  600
CGRGDSCLFS HKMPSKEESE TTACKPELKP PMVQSNSRSQ QVNIGGASQQ NVHALGFSTG  660
IHSRNNTKQN VTENVLKKPE LATKGISFPS VENSSLVHSS MSKQGGVTPD RNTGTKAGSQ  720
IDQSPFSSIQ NSNEILKRTP VTTPKGINFL SFAKASPDAA RGKSQVSHQT SPGVSETVQN  780
SNGMLKSDKT AASLGTSFNP FGKCSVASPT GGQNLNAMLQ VNLPAASHRT NFNPFGNSSL  840
AGSGSDQNLK GIQPAESQGT SFNPFRKSSV TSSSSDQNLN GMLQNNQPAA SQGTSFNPFG  900
KSSVTSFSSD QNLRGILQAH QPSASQGTSL NPFEKSSVSS SSTVNPDSLT SCWGNGSNRD  960
SRESQNTADK PQNSSAVSLR LPPSPLTSGQ SSDHVASKFC KGTANSFQRG LFSTLAFAAK  1020
YRAQNMNQSI GSTDAQVDKG N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1490511RKRGPPNKEKKERKKAKERKKR
2502524RKKAKERKKRAEKNRELGVKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028949999.10.0uncharacterized protein LOC103400820
TrEMBLA0A498I0150.0A0A498I015_MALDO; Uncharacterized protein
STRINGXP_008337718.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66502323