PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000866008 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 151aa MW: 17107.9 Da PI: 9.5538 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29 | 1.8e-09 | 80 | 102 | 34 | 56 |
HHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 34 AkklgLterqVkvWFqNrRakek 56 Ak lgL+ rqV +WFqNr a++k MDP0000866008 80 AKDLGLQPRQVAIWFQNRWARWK 102 899*******************9 PP | |||||||
2 | HD-ZIP_I/II | 80.2 | 3.2e-26 | 80 | 137 | 33 | 90 |
HD-ZIP_I/II 33 areLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 a++Lglqprqva+WFqnr AR+ktk+lEkdye+L+++y++lk++ e+L+ke+++L++e MDP0000866008 80 AKDLGLQPRQVAIWFQNRWARWKTKHLEKDYEVLQANYNNLKANCENLSKENDKLKAE 137 99*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 7.09E-6 | 80 | 105 | No hit | No description |
PROSITE profile | PS50071 | 10.106 | 80 | 104 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-9 | 80 | 111 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 9.0E-7 | 80 | 102 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.72E-8 | 80 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF02183 | 9.1E-12 | 104 | 137 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MAGERVNGXR NSSVLSALLQ NQRSSEPLDS LFLSRSSTSS FAHFLGSRLK MYVEEVDRIG 60 HCSTSMSTKI TGKMTWENPA KDLGLQPRQV AIWFQNRWAR WKTKHLEKDY EVLQANYNNL 120 KANCENLSKE NDKLKAEQHQ AAGESDAGRW * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.2594 | 1e-71 | bud| cell culture| fruit| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008346529.1 | 2e-54 | homeobox-leucine zipper protein HAT5-like | ||||
TrEMBL | A0A498HX63 | 2e-42 | A0A498HX63_MALDO; Uncharacterized protein | ||||
TrEMBL | A0A498KPY6 | 6e-42 | A0A498KPY6_MALDO; Uncharacterized protein | ||||
STRING | XP_008357588.1 | 1e-108 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01470.1 | 3e-21 | homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000866008 |