PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000865032 | ||||||||
Common Name | AP2D34 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 326aa MW: 36213.5 Da PI: 5.9764 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 134 | 183 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g MDP0000865032 134 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAFKLRG 183 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.11E-34 | 133 | 193 | No hit | No description |
PROSITE profile | PS51032 | 23.341 | 134 | 191 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-32 | 134 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.4E-38 | 134 | 197 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-23 | 134 | 192 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-14 | 135 | 183 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 135 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MATAIDLYSS STMTPDLXDL LREDQLMKAL MPFMKSASST SPSTSYTYPP QNNQNFNLYP 60 DFCSAPMISQ AGVIGLNQLT PSXILEIQSQ MVLQQHQQKQ QIXAFASSAA YLKLLSTKAI 120 PMKKAGTPSK PTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEEA ALAYDKAAFK 180 LRGDFACLNF PHLKHQGAXD SGAFGHYKXL HSSVDAKLQE ICQSLAANST KQGNTGEPCS 240 VPETKPMVSA PLETRMDDSF KTELKSEWEA FSSLSSSPSR SDRSDESSTP ESDITFLDFS 300 DSQWDEAENF GLEKYPSVEI DWSAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 133 | 191 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30382 | 0.0 | fruit| leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732458 | 0.0 | GU732458.1 Malus x domestica AP2 domain class transcription factor (AP2D34) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028961509.1 | 0.0 | ethylene-responsive transcription factor ERF060-like | ||||
TrEMBL | A0A1P8VHT7 | 0.0 | A0A1P8VHT7_9ROSA; DREB6.5 | ||||
STRING | XP_009345480.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1057 | 32 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78080.1 | 2e-54 | related to AP2 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000865032 |
Publications ? help Back to Top | |||
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