PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000863616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 444aa    MW: 49061.8 Da    PI: 4.9603
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000863616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS297.24.3e-91474322373
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfsh 95 
                    ++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r ++  ++ ++    s+++++  s+ +++++l  ++++ P+++f++
  MDP0000863616  47 EKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWILRALISRASKVFPTPMNFN-GSSSTSTIPSRLMSVTELagYVDLIPWHRFGY 141
                    689***************************************************777777654.44444445666666666689************ PP

           GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvak.rle 187
                     + N+aIl+a+eg+ +vHi+Df+i++G+QWp+L++aL +Rpegpp lRiT+ +   ++    + + ee+g rL +f +  +vpfefnv+  + +le
  MDP0000863616 142 CASNSAILKAIEGCPKVHILDFSITHGVQWPTLIDALEKRPEGPPLLRITVPNWRPQVppsLNVSSEEVGLRLGNFSRFRDVPFEFNVIENSsSLE 237
                    **************************************************9887555578778899**********************94443666 PP

           GRAS 188 dl.....eleeLrvkpgEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                     l     ++++L ++++E+l+Vn++  l +l de++           r+++L++++sl+P+++vvv++++d++++s+  r++ +++y +  fdsle
  MDP0000863616 238 LLlstqlNPSSLGLREDEVLVVNCQNWLRYLSDEPLGGIPgyqdgsMRNTFLNTIRSLNPRIIVVVDEDSDLTAPSLSSRITTCFNYLWIPFDSLE 333
                    5556666999**********************77653222222233677*********************************************** PP

           GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLv 368
                    + lp++s +r+++E   +g +i+n++  eg++r+er e+  + ++rl++ GF+++p+ e++ak++k+ll +++  g+ ++ e++ lvl+Wk+++ v
  MDP0000863616 334 TFLPKDSTQRMNYESD-VGHKIENIIGFEGQQRIERLESGVTMSQRLRNIGFSSAPFCEETAKEVKALLDEHA-SGWGMKREEDMLVLTWKGHNSV 427
                    ****************.********************************************************.889999999************* PP

           GRAS 369 svSaW 373
                    +++aW
  MDP0000863616 428 FATAW 432
                    ***** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.02520414IPR005202Transcription factor GRAS
PfamPF035141.5E-8847432IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MKTEVRGSIS SISLQNPSTA VFTTSQGKSL TGALTGCLGS LDGACIEKLL LHCASALESN  60
DVTLAQQVMW VLNNVASSVG DPNQRLTSWI LRALISRASK VFPTPMNFNG SSSTSTIPSR  120
LMSVTELAGY VDLIPWHRFG YCASNSAILK AIEGCPKVHI LDFSITHGVQ WPTLIDALEK  180
RPEGPPLLRI TVPNWRPQVP PSLNVSSEEV GLRLGNFSRF RDVPFEFNVI ENSSSLELLL  240
STQLNPSSLG LREDEVLVVN CQNWLRYLSD EPLGGIPGYQ DGSMRNTFLN TIRSLNPRII  300
VVVDEDSDLT APSLSSRITT CFNYLWIPFD SLETFLPKDS TQRMNYESDV GHKIENIIGF  360
EGQQRIERLE SGVTMSQRLR NIGFSSAPFC EETAKEVKAL LDEHASGWGM KREEDMLVLT  420
WKGHNSVFAT AWVPNPNELL IED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B2e-604743434420Protein SHORT-ROOT
5b3h_E2e-604743434420Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009341443.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A498J7T60.0A0A498J7T6_MALDO; Uncharacterized protein
STRINGXP_008348129.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-120GRAS family protein