PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000862363

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SRS

Protein Properties

Length: 363aa MW: 38496.9 Da PI: 6.8665

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000862363	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.7	1.3e-67	123	274	2	153
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel..kskkqsalsstklssae 95 +sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerq+q +a++++++++++++++ + r + k + ++l++ +++s++ MDP0000862363 123 SSGSMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQEQFSALQQNQNQQQQQEQQIQFRGEnpKRLRDNSLACVRIPSNT 218 5789****************************************************99999998777776666552356677888888988887 PP DUF702 96 skkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s le + +P+evss+avfrcv+vs++dd +e++aYqta +igGhvfkG+LydqG++ MDP0000862363 219 S--GLELNPFPPEVSSPAVFRCVKVSAMDDVDEQFAYQTAXNIGGHVFKGLLYDQGID 274 5..588999*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.9E-64	126	274	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	128	170	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.1E-24	226	273	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
MAGLFCLGGR DQGPTSGDKQ GGEDQSGRVG GAAAEAAAVG GGGNLFLYRS SGEAQAEIYN 60 KGFDIWPSQY HPHQNLNYYS FGVDPSYNHR HLDNNNDGVS ADDLSAGLRL TMMRGGLGGL 120 GSSSGSMNCQ DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQEQFSAL 180 QQNQNQQQQQ EQQIQFRGEN PKRLRDNSLA CVRIPSNTSG LELNPFPPEV SSPAVFRCVK 240 VSAMDDVDEQ FAYQTAXNIG GHVFKGLLYD QGIDGQYYPS SGGGGGESSS GGRGTSHDHH 300 QDGGGSGGGG GHPHHQQHDL VTVAAAGGTS GNPSTTLLDP SLFPAPLNAF MAGTQYFPPP 360 RS*

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

MAGLFCLGGR DQGPTSGDKQ GGEDQSGRVG GAAAEAAAVG GGGNLFLYRS SGEAQAEIYN  60
KGFDIWPSQY HPHQNLNYYS FGVDPSYNHR HLDNNNDGVS ADDLSAGLRL TMMRGGLGGL  120
GSSSGSMNCQ DCGNQAKKDC PHLRCRTCCK SRGFQCQTHV KSTWVPAAKR RERQEQFSAL  180
QQNQNQQQQQ EQQIQFRGEN PKRLRDNSLA CVRIPSNTSG LELNPFPPEV SSPAVFRCVK  240
VSAMDDVDEQ FAYQTAXNIG GHVFKGLLYD QGIDGQYYPS SGGGGGESSS GGRGTSHDHH  300
QDGGGSGGGG GHPHHQQHDL VTVAAAGGTS GNPSTTLLDP SLFPAPLNAF MAGTQYFPPP  360
RS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028962430.1	0.0	protein SHI RELATED SEQUENCE 1-like isoform X1
TrEMBL	A0A498J7I6	0.0	A0A498J7I6_MALDO; Uncharacterized protein
STRING	XP_009335611.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-63	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	MDP0000862363