PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000861708 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35599.6 Da PI: 8.1848 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.9 | 5.9e-19 | 117 | 167 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+WvAeIr p + r r++lg+++tae Aa a+++a+ kl+ge MDP0000861708 117 LYRGVRQRH-WGKWVAEIRLPQN---RMRVWLGTYDTAEAAAYAYDRAAYKLRGE 167 59******9.**********954...5**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.23E-16 | 116 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-31 | 117 | 175 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-36 | 117 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.301 | 117 | 174 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-22 | 117 | 174 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.2E-10 | 118 | 129 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.3E-13 | 118 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.2E-10 | 140 | 156 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MDTMQENNLA FGFTDAIDIR SSLSSIILTS STNTLDSIFS HCPQTLTTAV TTTSSGSSVS 60 EPLGSSVYLR QRDLLQKFCD ESRANANATV SRSFATNPLQ SSACSSTTYM APYKKKLYRG 120 VRQRHWGKWV AEIRLPQNRM RVWLGTYDTA EAAAYAYDRA AYKLRGEYAR LNFPNLKDPS 180 KLGFGDGSRL NAVKNSVDAK IQAICQKVKR DRAKKNVKKS SSSVGGGDGS FSENGKVVKV 240 ESSPSSSSSP LVFGDGFGHE MASLTPTPTX SEDGVWRSEK NSPPSVSTEF QMGMAELGMG 300 EESEFEGCSL AGMPSFDPEL IWEVLAN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 5e-20 | 116 | 174 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.15656 | 0.0 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028959535.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 2e-69 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A498JIL8 | 0.0 | A0A498JIL8_MALDO; Uncharacterized protein | ||||
STRING | XP_008341502.1 | 1e-169 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7181 | 31 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G64380.1 | 8e-50 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000861708 |
Publications ? help Back to Top | |||
---|---|---|---|
|