PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000861160 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 175aa MW: 19513.8 Da PI: 6.9306 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.5 | 1.1e-43 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +Ca+C++lrr+CakdC++apyfp+++p kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+ MDP0000861160 7 PCASCRLLRRRCAKDCIFAPYFPSDDPYKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQVSELQMQLAV 102 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e MDP0000861160 103 AQAE 106 9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.115 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.4E-43 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MGSGSSPCAS CRLLRRRCAK DCIFAPYFPS DDPYKFAIVH KVFGASNVSK MLQELPIHQR 60 GDAVSSLVYE ANARVRDPVY GCVGAISFLQ NQVSELQMQL AVAQAETLCF QMQQDPVAXP 120 TQIDQHHHQH QDHDQKSLLL SNSDFNSIPH QYFSSFASPS NVIQDPLKRE SLWT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-48 | 2 | 121 | 7 | 128 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-48 | 2 | 121 | 7 | 128 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1439 | 0.0 | leaf| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008354824.2 | 1e-126 | LOW QUALITY PROTEIN: LOB domain-containing protein 12 | ||||
Swissprot | Q8LBW3 | 4e-80 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | A0A498K785 | 1e-126 | A0A498K785_MALDO; Uncharacterized protein | ||||
STRING | XP_008354824.1 | 1e-126 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 8e-71 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000861160 |
Publications ? help Back to Top | |||
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