PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000859459
Common NameHD18
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31093.7 Da    PI: 7.3501
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000859459genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.33.1e-1955108356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++++eq+++Le+ Fe ++++  e++ +LA++lgL+ rqV vWFqNrRa++k
  MDP0000859459  55 KKRRLNSEQVKALERNFEVENKLEPERKVKLAEELGLQPRQVAVWFQNRRARWK 108
                    456899***********************************************9 PP
2HD-ZIP_I/II127.84.5e-4155146293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    kkrrl++eqvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy+ Lk+ yd lk + ++Le+++++L+e+l++
  MDP0000859459  55 KKRRLNSEQVKALERNFEVENKLEPERKVKLAEELGLQPRQVAVWFQNRRARWKTKQLERDYSILKTDYDGLKLNFASLERQNKALAEKLRQ 146
                    9***************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1948112IPR009057Homeodomain-like
PROSITE profilePS5007117.52450110IPR001356Homeobox domain
SMARTSM003891.8E-1753114IPR001356Homeobox domain
CDDcd000867.36E-1655111No hitNo description
PfamPF000461.1E-1655108IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.2E-2057117IPR009057Homeodomain-like
PRINTSPR000318.3E-68190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000318.3E-690106IPR000047Helix-turn-helix motif
PfamPF021834.0E-13110151IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MKRFSSSDSL GALVSNFPSK EGGKLAKDNY GYSKELQAML DSLNQEDVGE EMSGKKRRLN  60
SEQVKALERN FEVENKLEPE RKVKLAEELG LQPRQVAVWF QNRRARWKTK QLERDYSILK  120
TDYDGLKLNF ASLERQNKAL AEKLRQLKAK LCGETAERND SVKEESPISM CKSSENLEVD  180
LIKNLKFKDG SSDSDSNGVL MKEESNGNSS LGFNNNRNSI SSNSMVNWFQ LSDSRSVGGK  240
GFHAQTVRME EQSFFSTDES CNFFSVDQAP SLHW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102110RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.110680.0bud| cell culture| fruit| leaf| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001281037.10.0homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A498HWK90.0A0A498HWK9_MALDO; Uncharacterized protein
STRINGXP_008391175.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.18e-61homeobox protein 16