PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000851695

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

TCP

Protein Properties

Length: 281aa MW: 29713.7 Da PI: 8.5966

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000851695	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	120.5	2e-37	36	164	2	99
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 a kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s +++ ss+ MDP0000851695 36 ALKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGHTSSSapssdhkpq 130 679*************************************************************99999777.44444444444444445555678 PP TCP 89 .............................kaaksaakskk 99 + ++++ MDP0000851695 131 llgptpfilgkrvrgplddhdnnhnhdasA------TKNP 164 888888888877665555544433211110......1111 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-34	42	168	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	42	96	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MSNSEDPNNE LTNGGGGGGA MVEQTSQRPS SNGVLALKKP PSKDRHSKVD GRGRRIRMPI 60 ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TTPASFSTVS VSLRGGHTSS 120 SAPSSDHKPQ LLGPTPFILG KRVRGPLDDH DNNHNHDASA TKNPSDHHAN NDGAVSVVGH 180 SMASMLGPTA GGPGGFWAPH FGQVWSFAAT PPPELMDQSA VSHQQQQQHH QQQHSLFLQQ 240 QTMGEASAAR VGNYLPGHLN LLASLSGGHG NSGQREDDRR *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.24234	0.0	bud\| fruit\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	6e-75	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	6e-75	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	6e-75	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	6e-75	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028951613.1	0.0	transcription factor TCP7-like
Swissprot	Q9FMX2	4e-84	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A498HRI3	0.0	A0A498HRI3_MALDO; Uncharacterized protein
STRING	XP_009359974.1	1e-174	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	7e-69	TCP family protein

Link Out ? help Back to Top
Phytozome	MDP0000851695