PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000848905
Common NameAP2D50
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 313aa    MW: 34649 Da    PI: 4.5718
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000848905genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.8e-1778126355
            AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    y+G r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  MDP0000848905  78 YRGTRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 126
                    9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-3177135IPR001471AP2/ERF domain
PROSITE profilePS5103223.39377134IPR001471AP2/ERF domain
SMARTSM003804.1E-3777140IPR001471AP2/ERF domain
SuperFamilySSF541714.64E-2277135IPR016177DNA-binding domain
PRINTSPR003672.7E-117889IPR001471AP2/ERF domain
PfamPF008471.5E-1078126IPR001471AP2/ERF domain
CDDcd000181.44E-3278135No hitNo description
PRINTSPR003672.7E-11100116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MCGGAIISDF IPRDRRRGVT ASDIWPDSPF AKSNPDTFFG CNPTPTTHTD SIPRKKSQPI  60
SGNVQEEKPA KRQRKNXYRG TRQRPWGKWA AEIRDPRKGV RVWLGTFNTA EEAARAYDRE  120
ARKIRGNKAK VNFPNEDDDL SAQTYLKKPN PPLFQPKSFE LGFGYDLNQF AAFPSNSNSD  180
GFNSMAIANT DPIVISGEEN SWSGSDGAFS SKGLLGCNQN GMGGCQGGSE LTEVEETQEG  240
ELSLEAIARM EDDEVQKLSE ELMAYENMMK FYQIPYLDGQ FTATPQNPPP QESTVSDDLW  300
SFVDDESVPA SV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2178134360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A6e-21781361574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.114040.0bud| cell culture| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324740.0GU732474.1 Malus x domestica AP2 domain class transcription factor (AP2D50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315685.10.0ethylene-responsive transcription factor ERF073-like
TrEMBLA0A498K5850.0A0A498K585_MALDO; Uncharacterized protein
STRINGXP_008345219.10.0(Malus domestica)
STRINGXP_008369034.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67713449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.13e-37ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Tacken E, et al.
    The role of ethylene and cold temperature in the regulation of the apple POLYGALACTURONASE1 gene and fruit softening.
    Plant Physiol., 2010. 153(1): p. 294-305
    [PMID:20237022]