PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000848210

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 177aa MW: 19516.7 Da PI: 7.4041

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000848210	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.1	8.2e-45	13	111	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el++ MDP0000848210 13 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVHPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDE 108 7*********************************************************************************************99 PP DUF260 97 lke 99 +++ MDP0000848210 109 TNA 111 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.843	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.2E-44	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MASSSTSSYT NSPCAACKFL RRKCMPDCIF APYFPPEEPQ KFANVHKIFG ASNVSKLLNE 60 VHPHQREDAV NSLAYEAEAR MKDPVYGCVG AISVLQRQVI RLQKELDETN ADLVRYASSY 120 NHEILLPTSQ SERSSSSRVR GGGSLGQNSG SYFDPPWNRN AYGDRNYERG GGEGDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-65	3	117	1	115	LOB family transfactor Ramosa2.1
5ly0_B	3e-65	3	117	1	115	LOB family transfactor Ramosa2.1
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008341419.2	1e-111	LOB domain-containing protein 25
Refseq	XP_008341420.2	1e-111	LOB domain-containing protein 25
Swissprot	Q8L8Q3	2e-70	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A498HJC5	1e-112	A0A498HJC5_MALDO; Uncharacterized protein
STRING	XP_008341419.1	1e-130	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	6e-68	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	MDP0000848210

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]