PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000842815
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 478aa    MW: 52294.4 Da    PI: 8.3567
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000842815genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC71.78.6e-23182226145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+ep+rC+RtDGKkWRCsr+v  ++k+CErH h+ r+rsrk++++
  MDP0000842815 182 DPEPWRCKRTDGKKWRCSRDVAFDQKYCERHAHKTRNRSRKPVDS 226
                    79***************************************9985 PP
2QLQ30.98.4e-12130164237
            QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    +FT aQ ++L++Q ++yKy+ ++ P Pp+Ll++i+k
  MDP0000842815 130 PFTSAQREELERQTMIYKYMDSS-PAPPQLLLPISK 164
                    9******************9765.88*******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.2E-5129164IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-6130162IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166612.056130164IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.443182226IPR014977WRC domain
PfamPF088796.2E-19183224IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGQRNGFAEK GAAAETEWLG LMMRKTQQTQ QSFPRKKTMM VMNHHNHHHD PLLASAGREA  60
CGVWDNSPAS GGGLLFCNTS NPVSSCPTDL YPVGSDFVLP KSLQHHLPCS DHSLAFSSTG  120
GMVNANERVP FTSAQREELE RQTMIYKYMD SSPAPPQLLL PISKFPNLVK GSLELGISGS  180
SDPEPWRCKR TDGKKWRCSR DVAFDQKYCE RHAHKTRNRS RKPVDSQTLN PNLLTNNNNM  240
RSPRSNFFRQ NHISSQTTPF SCNMVPSTAA GGSHVQPRSS AWFMNGEAPA VDGSNQEWEQ  300
MMQFKLGLKR SSSSCPYTKP TNRDVDIPKQ QTESSLNLHT DYTGEIQGLQ TQQTRQIIDA  360
WSTLASAERE DRVFVSSNQK LPISSLTLSM CGGEGSNEER GSTLMGIGVL GAERESVGDL  420
KSQRANPMSW VMGSPPGGPL AEALCLGIAG GSNGSDSGST SYRSSRGDGR QEYGLIN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392635.10.0growth-regulating factor 8-like
TrEMBLA0A498JQH60.0A0A498JQH6_MALDO; Uncharacterized protein
STRINGXP_008392635.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138941621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.18e-37growth-regulating factor 8