PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000842644 | ||||||||
Common Name | AP2D19 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 26389 Da PI: 5.1904 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.7e-18 | 131 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp k +r++lg+f+t +Aaka++ a+ kl+g MDP0000842644 131 HYRGVRRRP-WGKYAAEIRDP---ArKGTRVWLGTFDTDVDAAKAYDCAAFKLRG 181 7********.**********8...4445**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.86E-30 | 131 | 189 | No hit | No description |
SMART | SM00380 | 8.4E-36 | 131 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.526 | 131 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-12 | 131 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-23 | 131 | 190 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-31 | 131 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 132 | 143 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-13 | 171 | 191 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MSTHEQDDST LXLIRQHLLX DFTFTDSFIS HLNFEITPDD ISYFEFQPVK PEYSSLSESG 60 SSSPISTPNY HSPQLSNSET KPESVNLPSM EVEPLNLSSQ CSPKRKYXTC QTSSSKDELQ 120 QVSGSGDVLX HYRGVRRRPW GKYAAEIRDP ARKGTRVWLG TFDTDVDAAK AYDCAAFKLR 180 GRKAILNFPL EAGLSEPPVN TXRKRRRSVK QEEVTETEEL ELQSWVVWEG EGA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-28 | 131 | 190 | 2 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-28 | 131 | 196 | 5 | 70 | ATERF1 |
3gcc_A | 4e-28 | 131 | 196 | 5 | 70 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 202 | 206 | RKRRR |
2 | 202 | 207 | RKRRRS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.30412 | 0.0 | leaf |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU732443 | 0.0 | GU732443.1 Malus x domestica AP2 domain class transcription factor (AP2D19) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009362711.1 | 1e-150 | PREDICTED: ethylene-responsive transcription factor ERF107-like | ||||
TrEMBL | A0A4D5XFE7 | 1e-149 | A0A4D5XFE7_9ROSA; Ethylene Responsive Factor ERF106 | ||||
STRING | XP_008343686.1 | 1e-168 | (Malus domestica) | ||||
STRING | XP_008375671.1 | 1e-168 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 1e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000842644 |
Publications ? help Back to Top | |||
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