PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000841379
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TALE
Protein Properties Length: 709aa    MW: 77684.1 Da    PI: 7.362
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000841379genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.6e-094044411954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  MDP0000841379 404 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 441
                    554459******************************88 PP
2BELL121.43.8e-39268339172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqe+q+kk kL+++l+eVd+rY+qy+ q+q+vissFe++ag+gsa+ Yt+lAl++iS++FrcLkdai++qi
  MDP0000841379 268 ERQEIQMKKGKLINMLDEVDQRYRQYHRQMQMVISSFEQAAGIGSARTYTALALQTISKQFRCLKDAITNQI 339
                    79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005747.3E-65194337IPR006563POX domain
PfamPF075262.0E-50199336IPR006563POX domain
PROSITE profilePS5007112.195382445IPR001356Homeobox domain
SMARTSM003895.3E-9385449IPR001356Homeobox domain
CDDcd000866.28E-12385446No hitNo description
SuperFamilySSF466898.98E-17386451IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28388451IPR009057Homeodomain-like
PfamPF059202.9E-18402441IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 709 aa     Download sequence    Send to blast
MAAYFHHHGG NSSEIQASSD GALQTLVLMN PGYVQYSDTP PPPQQQQQQP QPPSAATNLV  60
FLNSAPNSLT HHPSTLSHAP PSHHQQFLGI PLTQDPNGNS SLSMHHPHHD ISALHAFMPR  120
IQTQYALWNS IDPAASTRDT PRSQQGLSLS LSSQQPGFGS FQETSAEREV PSGEDIRVSS  180
GSNSSASGVT NGVSGMQSVL LSSKYLKAAQ ELLDEFVNVG NGMRTELPKK GNGQQSKAAA  240
ESSMAEARDG SVGGEGSGKR AAELSTAERQ EIQMKKGKLI NMLDEVDQRY RQYHRQMQMV  300
ISSFEQAAGI GSARTYTALA LQTISKQFRC LKDAITNQIR SANKSLGEED SVGGKIEGSR  360
LKYVDHQLRQ QRALQQLGMV QHNAWRPQRG LPERSVSVLR AWLFEHFLHP YPKDSDKHML  420
AKQTGLTRSQ VSNWFINARV RLWKPMVEEM YLEEAKEQEK NGSSEKMSKS NEDSASKSTA  480
PQDTENQTTS TFNSKQENSV NHNVATHPSR SISTPSTSPT NMVRNQSGFT LIGSSELDGI  540
TQGSPKKPRS TEIMHSSNSG VPCMNMESQE VSNEQVSMKF GNERQGRDGY SFMGGQTNFI  600
GNFGQYPIGE IGRFDADQFT PRFSGNGVSL TLGLPHCENL SLSGAHHHQT FLPNQNIQLG  660
RRVDIGETND QFGAINTSAP HSSAAAFENI DIQNRKRFVA QLLPDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A5e-16391449563Homeobox protein Meis2
3k2a_B5e-16391449563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.80460.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008391977.20.0BEL1-like homeodomain protein 1
RefseqXP_008391978.20.0BEL1-like homeodomain protein 1
SwissprotQ9SJ560.0BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A498I2D60.0A0A498I2D6_MALDO; Uncharacterized protein
STRINGXP_008391977.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-157BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]