PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000841002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 373aa    MW: 41105.8 Da    PI: 8.1808
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000841002genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.21.4e-08137158426
                    ---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                    + C++f++ G+C+ Gd+C FaHg
  MDP0000841002 137 AACPDFRK-GHCPKGDSCEFAHG 158
                    78******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.3885122IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6133159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.75E-5133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324134160IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6137158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.0E-6138160IPR000571Zinc finger, CCCH-type
SMARTSM0035618168191IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.338168192IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MMLGEPTRLH PTLHVPPWDS LDDHFIHTPT SPFSIPIHSG NSNGNASNGG DYSPLSPMFL  60
DSLAALHRYL PSNESDSLAE DPDMPMNPIS CDQFRMFEFK VRRCAHGRSH DWTDCPYAHP  120
GEKARRRDPR KYHYSGAACP DFRKGHCPKG DSCEFAHGVF ECWLHPARYR TQPCKDXLRC  180
NRRVCFFAHT PEQLRVLPGQ SPRTQGSGAL DSYPFGSSPT SILMSPPLSP PSESPPMSPN  240
SPXLGRNSVS KLVASMRNFK LAKMKMNSPP AWGTQMGSGF GSSPRGSAFR PGFCSLPSTP  300
TRTTGRVGPN PVDLWDQPCE EEPAMERVES GRDLRARMYA RLSKENSLGR VGRVDSGTAA  360
PDVGWISDLV SE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.98780.0bud| fruit| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028962643.10.0zinc finger CCCH domain-containing protein 23-like
SwissprotQ9M0G21e-114C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A498J9W70.0A0A498J9W7_MALDO; Uncharacterized protein
STRINGXP_008377933.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20563176
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.11e-112C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]