PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000841002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 373aa MW: 41105.8 Da PI: 8.1808 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.2 | 1.4e-08 | 137 | 158 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G+C+ Gd+C FaHg MDP0000841002 137 AACPDFRK-GHCPKGDSCEFAHG 158 78******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.38 | 85 | 122 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3.7E-6 | 133 | 159 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.75E-5 | 133 | 162 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.324 | 134 | 160 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 137 | 158 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-6 | 138 | 160 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 18 | 168 | 191 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.338 | 168 | 192 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MMLGEPTRLH PTLHVPPWDS LDDHFIHTPT SPFSIPIHSG NSNGNASNGG DYSPLSPMFL 60 DSLAALHRYL PSNESDSLAE DPDMPMNPIS CDQFRMFEFK VRRCAHGRSH DWTDCPYAHP 120 GEKARRRDPR KYHYSGAACP DFRKGHCPKG DSCEFAHGVF ECWLHPARYR TQPCKDXLRC 180 NRRVCFFAHT PEQLRVLPGQ SPRTQGSGAL DSYPFGSSPT SILMSPPLSP PSESPPMSPN 240 SPXLGRNSVS KLVASMRNFK LAKMKMNSPP AWGTQMGSGF GSSPRGSAFR PGFCSLPSTP 300 TRTTGRVGPN PVDLWDQPCE EEPAMERVES GRDLRARMYA RLSKENSLGR VGRVDSGTAA 360 PDVGWISDLV SE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.9878 | 0.0 | bud| fruit| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028962643.1 | 0.0 | zinc finger CCCH domain-containing protein 23-like | ||||
Swissprot | Q9M0G2 | 1e-114 | C3H49_ARATH; Zinc finger CCCH domain-containing protein 49 | ||||
TrEMBL | A0A498J9W7 | 0.0 | A0A498J9W7_MALDO; Uncharacterized protein | ||||
STRING | XP_008377933.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2056 | 31 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G19810.1 | 1e-112 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000841002 |
Publications ? help Back to Top | |||
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