PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000840574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 711aa MW: 78435 Da PI: 6.5948 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 26 | 81 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le +++++++p++++r +L+++lgL rq+k+WFqNrR+++k MDP0000840574 26 KKRYHRHTTHQIQRLEGMYKECPHPDEKQRMQLSRELGLAPRQIKFWFQNRRTQMK 81 678899***********************************************998 PP | |||||||
2 | START | 182.9 | 1.7e-57 | 225 | 449 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 +a a++el+ + +ep+W+kss + +n +++ ++f+++++ ++ea+r+sgvv+m+ lv ++d ++ + + + a t+ev MDP0000840574 225 IAANAMEELLGLLRTNEPLWMKSStdgrDVLNLETYERIFPRANShlktpnVRIEASRDSGVVIMNGLALVDMFMDPNKfgeLFPTIVSMARTIEV 320 577899**********************9*************999******9**************************67767777777******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 issg g lqlm++elq+lsplvp R+f+f+Ry++q ++g w+ivdvS d +q+++ + R+++lpSg+li++++ng+skvtwvehv+ + MDP0000840574 321 ISSGmlgshsGPLQLMYNELQVLSPLVPtREFYFLRYCQQIEQGLWIIVDVSYDFPQDNQ-FTNQCRSRRLPSGCLIQDMPNGYSKVTWVEHVEIE 415 ***********************************************************9.7999******************************* PP SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206 +++p h ++r l++sgla+ga +w+a+lqr ce+ MDP0000840574 416 DKVPtHRIYRDLIHSGLAFGAERWLAALQRMCER 449 ********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.63E-20 | 11 | 84 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 12 | 85 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.9E-18 | 24 | 87 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.57E-18 | 25 | 84 | No hit | No description |
Pfam | PF00046 | 1.1E-17 | 26 | 81 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 50.993 | 215 | 452 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-40 | 216 | 450 | No hit | No description |
CDD | cd08875 | 2.13E-119 | 219 | 448 | No hit | No description |
SMART | SM00234 | 5.2E-48 | 224 | 449 | IPR002913 | START domain |
Pfam | PF01852 | 2.7E-48 | 225 | 449 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.8E-9 | 313 | 447 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.56E-25 | 470 | 702 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009828 | Biological Process | plant-type cell wall loosening | ||||
GO:0010091 | Biological Process | trichome branching | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000976 | Molecular Function | transcription regulatory region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 711 aa Download sequence Send to blast |
MEYGSGGGGS GSGDHHDEAS GSQRRKKRYH RHTTHQIQRL EGMYKECPHP DEKQRMQLSR 60 ELGLAPRQIK FWFQNRRTQM KAQNERADNC ALRGENDKIR CENIAIREAL KNVICPSCGV 120 PPLNEDSYFD EHKLRMENAQ LKEELDRVSS IAAKYIGRPI SQLPPVQPIH ISSLDLSIAS 180 FGGHGMAGPS LDLDLLPGSA ASSMPNLPYQ PNGFSDMDKS LMTDIAANAM EELLGLLRTN 240 EPLWMKSSTD GRDVLNLETY ERIFPRANSH LKTPNVRIEA SRDSGVVIMN GLALVDMFMD 300 PNKFGELFPT IVSMARTIEV ISSGMLGSHS GPLQLMYNEL QVLSPLVPTR EFYFLRYCQQ 360 IEQGLWIIVD VSYDFPQDNQ FTNQCRSRRL PSGCLIQDMP NGYSKVTWVE HVEIEDKVPT 420 HRIYRDLIHS GLAFGAERWL AALQRMCERF ACLMVSGTST RDLEGVIPSP EGKRSMMKLA 480 QRMVNNFCAS ISASNGHRWT TLSGTNEIGV RVTIHKITDP GQPNGVVLSA ATTIWLPLSP 540 QNVFNFFKDE RTRPQWDVLS NGNAVQDVAH IANGSHPGNC ISVLRAFNTS QNNMLILQQS 600 CIDSSGSLVV YSPVDLPSIN IAMSGEDPSY IPLLPSGFSI SPDGQADQGD CASSSSCNAT 660 GSGSLITVAF QILVSSLPST KLNLESVNTV NTLIGNTVQQ IKTALNCNSS * |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00232 | DAP | Transfer from AT1G73360 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LM999991 | 2e-83 | LM999991.1 Malus baccata partial hdg11 gene for putative homeobox-leucine zipper protein HDG11-like, exons 1-2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008375041.1 | 0.0 | homeobox-leucine zipper protein HDG11-like isoform X1 | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A498JNT0 | 0.0 | A0A498JNT0_MALDO; Uncharacterized protein | ||||
STRING | XP_008375041.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000840574 |