PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000835454

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

GRAS

Protein Properties

Length: 292aa MW: 32913 Da PI: 5.3772

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000835454	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	29	1.3e-09	232	285	2	55
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar 55 + Ll++Ae v +++e+a++lL + + as + + +qR+++yfteAL++r+ + MDP0000835454 232 AHILLAAAEKVGYQQFERANRLLLHCEVDASFKVNGVQRVVFYFTEALRERIKQ 285 699*************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	4.4E-7	232	285	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MHSSPSQPLI FGVLGSGGGL TPQLEEYEKE DQEFKGKPDH LVGIQELGLG ERENLSHLSK 60 DQQHFKQVKE RTSSCKDHGQ YQQQNQHYQQ QSKSNYFDLD NFXFDPSFPS TQTIQDAGNQ 120 LMYSQIGGSD IAETNKQMPH QSSLAALDLL NNYGSAFKKL RGDRLSNRCN EAEASSYSIQ 180 QKLSTEEIMR VAGARYVQIS DQGYGDFFMP LHPFGYXLSG LSEEETKDVE LAHILLAAAE 240 KVGYQQFERA NRLLLHCEVD ASFKVNGVQR VVFYFTEALR ERIKQETGNS M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008369103.2	0.0	uncharacterized protein LOC103432677
TrEMBL	A0A498K8A5	0.0	A0A498K8A5_MALDO; Uncharacterized protein
STRING	XP_008369103.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF479	33	162

Link Out ? help Back to Top
Phytozome	MDP0000835454