PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000828055
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family WRKY
Protein Properties Length: 343aa    MW: 37441.7 Da    PI: 5.5839
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000828055genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-29168228259
                    --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                    +Dg++WrKYGqKe+ +s+fprsYYrCt++   +C +kk+v+r ++dp+++e+tY geH+++
  MDP0000828055 168 EDGFTWRKYGQKEIINSRFPRSYYRCTHQklyNCLAKKHVQRLDDDPSTFEVTYIGEHTCH 228
                    7****************************999***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-27164229IPR003657WRKY domain
SuperFamilySSF1182901.57E-26165229IPR003657WRKY domain
SMARTSM007741.1E-39167229IPR003657WRKY domain
PfamPF031062.0E-26168228IPR003657WRKY domain
PROSITE profilePS5081120.564168230IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDDIISLILH GCELARELGE TLPNLATQPD SLFNSLEKIT KIFGSAKERV LHSQDSSSSS  60
YLHNTLTLEH QQIGTSVEQW LRSNPQAMDI IQTQLAADRN EAKISGGIDI RGLEAAVRGS  120
QAVDVVPASD LNIASSSSQR PRQRKDQGLI SKMTVPAPRI GNTEIPPEDG FTWRKYGQKE  180
IINSRFPRSY YRCTHQKLYN CLAKKHVQRL DDDPSTFEVT YIGEHTCHMS ATAPSILTPT  240
ADHHITQDQM AATTEPPTSR WLSMDFNPIR GGSSSGGMIG GSCGGGGDDV GTSTGTRYPG  300
KEVDFPVMDL ADAMFNSGSS SSSMDFIFSS AERTWEPDDK KN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22168227968OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369416.10.0WRKY transcription factor 55
TrEMBLA0A498JIH30.0A0A498JIH3_MALDO; Uncharacterized protein
STRINGXP_008369416.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.11e-55WRKY DNA-binding protein 55