PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000827821
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-YA
Protein Properties Length: 301aa    MW: 33242.8 Da    PI: 9.5992
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000827821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.77.2e-32145201158
      CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                    d p+YVNaKQy++Il+RRq+Rakle+++kl  k+rkpylheSRh hAl+R RgsgGrF
  MDP0000827821 145 DGPIYVNAKQYRGILRRRQSRAKLEAQNKL-LKARKPYLHESRHLHALNRVRGSGGRF 201
                    57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-35143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.311144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.2E-27147201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.2E-23147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.2E-23178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MPLYTNSMSW IPSERQISES LSKDVSFKVV XPPQGYHDAK HLGLKLQTDQ GSSSTTHSIV  60
HSQGEDETCG KGADGKLKPV FLPSNQDLMS NPSQVGYGNL VGCIPYPYVD PYFSGFMTAY  120
GSQAMSHMLG IVPTRVLLPP DLAQDGPIYV NAKQYRGILR RRQSRAKLEA QNKLLKARKP  180
YLHESRHLHA LNRVRGSGGR FLSTKRQSDQ NASSSTHHVS DSISVLQKDT GDTESHHSES  240
SEFLPSVAIH SDMTSVSNTN DNFRQPDRRF VGIPPHMSGA MEFHGXFMRA GNQHFASVVR  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-20145205262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.87220.0fruit| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008337748.20.0nuclear transcription factor Y subunit A-4-like isoform X2
TrEMBLA0A498KFE51e-169A0A498KFE5_MALDO; Uncharacterized protein
STRINGXP_008337747.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-44nuclear factor Y, subunit A3