PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000827722
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 733aa    MW: 82428.7 Da    PI: 5.9851
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000827722genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS395.74.9e-1213577271373
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+avss+d + a++lL++++ ++sp gd+ qRla +f+++L+arla++++++y al++++ts    ++ l+a+++++e++P++k++ +
  MDP0000827722 357 LRTLLISCAQAVSSDDRRTANELLKQIRXHSSPFGDSSQRLAXCFANGLEARLAGTGTQIYTALSSKRTS---AADMLKAYQTYFEACPFMKVAII 449
                    6789************************************************************999999...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN+ I + +e++e++HiiDf+i +G+QWpaL++ L+ R++gpp+lRiTg++ p+sg   +e+++etg+rLak++e+ +vpfe+n  +ak++e+++
  MDP0000827722 450 FANHXISKLAEKAETLHIIDFGILYGFQWPALIRCLSRRAGGPPKLRITGIELPQSGfrPEERVQETGHRLAKYCERYNVPFEYNG-IAKKWEAIQ 544
                    ********************************************************9*****************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +eeL+vk++E+laVn+ ++ ++llde+v ++s+rd+vL++++s++P++++++  + ++n++ F++rf eal ++sa+fd+++++l+re++ r + E
  MDP0000827722 545 YEELKVKRDEVLAVNCLFRFKNLLDETVVVNSPRDTVLNFIRSMNPDIFIHSVINGSYNAPFFVTRFREALFHFSAMFDMFDTNLSREDQMRLMFE 640
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                    +e+lgre+vn vaceg+er+ r et+++W++r ++aGFk++pl+ + +++ ++ ++  + + ++v+e+ +++++gWk+r L+s S+W
  MDP0000827722 641 EEFLGREVVNTVACEGSERVVRPETYKQWQARNMRAGFKQLPLNRELMNKLRAKVKLGYHRDFMVDEDGNWMLQGWKGRILYSSSCW 727
                    ***********************************************************999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.725331708IPR005202Transcription factor GRAS
PfamPF035141.7E-118357727IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MDPSSYQLPD SNSNFIDQTL SPNFNEYPSS DPFVDLSFLG QNPSNSALSP SLSPEGDDSD  60
YSDSVLRYIN QVLMEEDMET KPCMFHDPLA VQAAEKSLFE VLGGKFPPSP NQHPLNFESP  120
DGRSSATFSD HSGNNSSSLS SSTSHLDDSR SSVDVIEHKP SILQNPIPEN FVFQSKAKSQ  180
FSSNGNGLVG SYVSEPMVSN LFRERELVLQ FNRGVEEASK FLPRGQLIVN VENNKPYTVA  240
NGKAENVVVK TEKDEGEYFP TSSRGKKSHE REDADLEVGR STKQSAVYEE TXADLSEIFD  300
KVLVCGEGKP KPIVSEGEEV CLDEANKALQ QNGQSVGTSN GKTRAKKKGD KKEVIDLRTL  360
LISCAQAVSS DDRRTANELL KQIRXHSSPF GDSSQRLAXC FANGLEARLA GTGTQIYTAL  420
SSKRTSAADM LKAYQTYFEA CPFMKVAIIF ANHXISKLAE KAETLHIIDF GILYGFQWPA  480
LIRCLSRRAG GPPKLRITGI ELPQSGFRPE ERVQETGHRL AKYCERYNVP FEYNGIAKKW  540
EAIQYEELKV KRDEVLAVNC LFRFKNLLDE TVVVNSPRDT VLNFIRSMNP DIFIHSVING  600
SYNAPFFVTR FREALFHFSA MFDMFDTNLS REDQMRLMFE EEFLGREVVN TVACEGSERV  660
VRPETYKQWQ ARNMRAGFKQ LPLNRELMNK LRAKVKLGYH RDFMVDEDGN WMLQGWKGRI  720
LYSSSCWVPS RS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-5236472926380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161650.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028945142.10.0uncharacterized protein LOC103422728
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A498IRE00.0A0A498IRE0_MALDO; Uncharacterized protein
STRINGXP_008366267.10.0(Malus domestica)
STRINGXP_008384951.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]