PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000827400 | ||||||||
Common Name | EBB1, LOC103452381 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 433aa MW: 47760.2 Da PI: 7.1831 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.9 | 7.7e-16 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+ta eAa a++ a+++++g MDP0000827400 50 RYRGVRRRP-WGRYAAEIRDPL----SkERRWLGTFDTAXEAACAYDCAARAMRG 99 59*******.**********73....35999**********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.51E-20 | 50 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-32 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.259 | 50 | 107 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-9 | 50 | 99 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-28 | 50 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.82E-28 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 1.7E-8 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009735 | Biological Process | response to cytokinin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0010084 | Biological Process | specification of organ axis polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 433 aa Download sequence Send to blast |
MEEAIRRMDE FTHSSEPDPI TKAQRKSTTA ATNKRSLRDT ATAAASGAMR YRGVRRRPWG 60 RYAAEIRDPL SKERRWLGTF DTAXEAACAY DCAARAMRGV KARTNFVYPP SPPTDVVADH 120 PFPPFSHHMH SHPSAKTRNG YGGANYSPSW NSVPFLQYPS PNQNDGYGDA TTAAATSFNM 180 LFLRNFINPS QNPSPVYNNQ YPYNINGSSS ISCSSASLVN HPSSGPRHEA NISGSTNFTT 240 GSSSSMATTP TSATTTLPFM DITSPPPTKP TSHDDQHDYS SDFFPTEPSD SGFLEEVIHR 300 FFPKPTSKKL SNDVPKWTDD YAHPSSAAQT PCFDGSSTRS VGGYSKNDHR QVNVCYNFQE 360 LLPLPQPHKL EGRSFNELMD HHHQQQQVSQ PQAVPSYNDH VPLGGGSDHS MGVDNMFQYP 420 EVMGEFAARF QN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-17 | 50 | 106 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KP164995 | 0.0 | KP164995.1 Malus domestica AP2/ERF domain transcription factor (EBB1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306188.1 | 0.0 | ethylene-responsive transcription factor ESR1-like | ||||
TrEMBL | A0A0D5CTG1 | 0.0 | A0A0D5CTG1_MALDO; AP2/ERF domain transcription factor | ||||
STRING | XP_008390095.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12980.1 | 1e-16 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000827400 |
Entrez Gene | 103452381 |
Publications ? help Back to Top | |||
---|---|---|---|
|