PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000827249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 445aa MW: 48692.6 Da PI: 9.5987 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.7e-05 | 208 | 230 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg+ F +nL+ H+ + H MDP0000827249 208 PCPECGEIFMKAENLELHQAVrH 230 7******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.037 | 207 | 235 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 207 | 230 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.36E-21 | 232 | 442 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.9E-13 | 233 | 441 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MASSNKPKTQ RKPTKQTHHK LQKQHENKNL KPQKAEKKPA EKPPYWSVVR GLLTCKHLQP 60 VQLPQKQKQP NEQQAMEEAD NAAKKCKKMR CSGSLCXNTK IMQRPEMLAS PEVHKKRAST 120 SMGSSGHSNE TSSRSMKAPL HEINGVVSAS SSSFSAVSSS NNSSSAAGGG SFRAMPFRRF 180 SGCYECRMVV DPVLGFARDP SLRGSICPCP ECGEIFMKAE NLELHQAVRH AVSELGPEDT 240 SKNIVEIIFQ SSWLKKETPI CKIDRILKVH NTQNTITKFE EYRDSIKAKA TKLPKKHPRC 300 IADGNELLRF HCTTFACSLG LNGSSNLCNS IPHCNVCSII KNGFNKFSGE LTELGILTTA 360 TSGRAHDKAV VAAEEGDKRA MLVCRVIAGR VKKNVEGSVG NGNVGMEEYD SVAGAVGVYS 420 NLDELYVFNP KAILPCFVVI YGGY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009366983.1 | 0.0 | PREDICTED: uncharacterized protein LOC103956687 | ||||
TrEMBL | A0A498HYJ4 | 0.0 | A0A498HYJ4_MALDO; Uncharacterized protein | ||||
STRING | XP_008361552.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8473 | 21 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 1e-102 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000827249 |