PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000826899
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 307aa    MW: 33751 Da    PI: 7.3266
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000826899genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.33.6e-331872155
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   k+rlrWt+eLHerF++av qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  MDP0000826899 18 KQRLRWTHELHERFIDAVVQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 72
                   79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.8891575IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.1E-311773IPR009057Homeodomain-like
SuperFamilySSF466892.87E-171772IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-251873IPR006447Myb domain, plants
PfamPF002495.7E-92071IPR001005SANT/Myb domain
PfamPF143791.6E-23104150IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDAVSGGNSL NNPNLASKQR LRWTHELHER FIDAVVQLGG PDRATPKGVL RVMGVQGLTI  60
YHVKSHLQKY RLAKYLPDSS SDGKKADKKE PGDVLSNLDG SSGMQITEAL KLQMEVQKRL  120
HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLSEAPG SGHLVRLSSD NCPESDNKTD  180
PATPAPTSEC PLQDKAAKEC APAKSISIDE SFSSRREPLT PDSVCHVGSP AESPKAERLT  240
KKRRVNIGEA FSDPEVVLTH QILESSLDSS YQQGHTAFLP REQFHPSSGI SFRNENQLEK  300
VAGSDM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A3e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-231875158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.3990.0bud| fruit| leaf| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008384340.20.0myb family transcription factor PHL7-like isoform X1
SwissprotQ9SJW01e-136PHL7_ARATH; Myb family transcription factor PHL7
TrEMBLA0A498JVV00.0A0A498JVV0_MALDO; Uncharacterized protein
STRINGXP_008384340.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86103343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-114G2-like family protein