PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000824506 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C3H | ||||||||
Protein Properties | Length: 87aa MW: 9862.23 Da PI: 7.336 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.2 | 4.4e-06 | 59 | 71 | 14 | 26 |
--TTTTT-SS-SS CS zf-CCCH 14 tCkyGdrCkFaHg 26 tC++G C+F+H+ MDP0000824506 59 TCSRGTACNFIHC 71 8***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54928 | 1.88E-8 | 5 | 46 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
Gene3D | G3DSA:3.30.70.330 | 3.0E-11 | 5 | 46 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
PRINTS | PR01848 | 1.1E-6 | 10 | 32 | IPR009145 | U2 auxiliary factor small subunit |
PRINTS | PR01848 | 1.1E-6 | 63 | 75 | IPR009145 | U2 auxiliary factor small subunit |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000398 | Biological Process | mRNA splicing, via spliceosome | ||||
GO:0089701 | Cellular Component | U2AF | ||||
GO:0000166 | Molecular Function | nucleotide binding | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MEYLCQVCRN GAFHLRGNVY IHYKSMDSAV VAYQSVNGRY FAGKQMEGCH MRGIYEVETC 60 SRGTACNFIH CFRNPGGDYE WADMLC* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028950772.1 | 5e-38 | zinc finger CCCH domain-containing protein 5 | ||||
Swissprot | Q9SY74 | 5e-35 | C3H5_ARATH; Zinc finger CCCH domain-containing protein 5 | ||||
TrEMBL | A0A498HRR4 | 8e-37 | A0A498HRR4_MALDO; Uncharacterized protein | ||||
STRING | XP_009362161.1 | 3e-38 | (Pyrus x bretschneideri) | ||||
STRING | XP_008363366.1 | 1e-37 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4713 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 2e-37 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000824506 |
Publications ? help Back to Top | |||
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