PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000814056 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 552aa MW: 59640.7 Da PI: 7.9082 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.3 | 1.5e-24 | 174 | 217 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrC+RtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e MDP0000814056 174 DPEPGRCKRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKHVE 217 79****************************************98 PP | |||||||
2 | QLQ | 55.9 | 1.3e-19 | 81 | 114 | 2 | 35 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 +FT+aQ+ +L++Q+++yKy++a++PvP +Ll+++ MDP0000814056 81 PFTNAQWKELERQAMIYKYMVASLPVPRDLLFPL 114 8******************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 7.0E-10 | 80 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.9E-13 | 81 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.723 | 81 | 116 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.586 | 174 | 218 | IPR014977 | WRC domain |
Pfam | PF08879 | 1.7E-20 | 175 | 217 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 552 aa Download sequence Send to blast |
MMMVHHDNHR RPFPPSDTTP APDAGGPTCN RPPPTYDDVV AASTGTGSSS GGGAVLRNLQ 60 PFDIRTHTCS AGGMTTSFGF PFTNAQWKEL ERQAMIYKYM VASLPVPRDL LFPLTTTPPG 120 TTAASQSPCN PLSFCFRPRE MISAHPFSLS ALLRLCREKS AGGTFNLRLS NSTDPEPGRC 180 KRTDGKKWRC SRDVAPDQKY CERHMHRGRP RSRKHVEVHA TAASKRVRHD INLAPPLPTV 240 SQETVSISNP GNRINKNVCS SRFMGSNLHP YGPSPVFPER DGAKFASFES MNSASANREP 300 RNLDWLMMKG EPVSDAQWHQ LMHSKTELST KIPYFDPNSS VFSNRSEEES FLNLNSYANF 360 NAGEDQQDCG ECNLFLNPDV APLESPLLEE TPRYFIDAWS KAVMDEANPV NNNDNSSAPS 420 SGQLSPSSLT LSMGGYNTIS EEMGQTQMSL GTSGNGMMPR VSTWPASAPG GPLAEVLKPT 480 TSAASNPSSP VTTGTTTNGE LGSPLAVSPP SGVLQKKFVS PSDSSGNSSP TLASSRAKPE 540 IVSLWLNQSK A* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008376804.1 | 0.0 | growth-regulating factor 4 | ||||
TrEMBL | A0A498JIB1 | 0.0 | A0A498JIB1_MALDO; Uncharacterized protein | ||||
STRING | XP_008376804.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G53660.1 | 1e-32 | growth-regulating factor 7 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000814056 |