PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000809773
Common NameMYBR7
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 322aa    MW: 35027.8 Da    PI: 5.4268
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000809773genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like39.61.2e-123862125
        G2-like  1 kprlrWtpeLHerFveaveqLGGse 25
                   kprlrWt eLHerFv+av+qLGG++
  MDP0000809773 38 KPRLRWTAELHERFVDAVTQLGGPD 62
                   79*********************98 PP
2G2-like51.13e-16771062655
        G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +AtPkti+++m+vkgLtl+h+kSHLQkYRl
  MDP0000809773  77 EATPKTIMRTMGVKGLTLYHLKSHLQKYRL 106
                    69***************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-3035106IPR009057Homeodomain-like
SuperFamilySSF466891.08E-1337106IPR009057Homeodomain-like
PfamPF002492.2E-740105IPR001005SANT/Myb domain
TIGRFAMsTIGR015577.5E-1077107IPR006447Myb domain, plants
PfamPF143794.5E-26153199IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010628Biological Processpositive regulation of gene expression
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYSAIHSLPL DGHGDFGGSL DGTNLPGDAC LVLTTDPKPR LRWTAELHER FVDAVTQLGG  60
PDTLKLYTCE LWVFNVEATP KTIMRTMGVK GLTLYHLKSH LQKYRLGKLS CKDSAENSKD  120
GIAASCIAES QDTGSSSAVS SRVIAQDLND GYQVTEALRV QMEVQRRLHE QLEVQRRLQL  180
RIEAQSKYLQ SILEKACKAL NDQAATAAGV EAAKEELSEL AIRVSNDCEG IVPLDSTKIP  240
SLSEIAAALE NRDVSNVMAH LGNCSVDSCL TSTGSPVLPM DMSSLAAAMK KRQRPFFGNG  300
DSLPLESNMR QEVEWMMSNI G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-1638108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-1638108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-1638108157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-1638108157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-1638108258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.118950.0bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00378DAPTransfer from AT3G24120Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280781.10.0myb family transcription factor APL
SwissprotQ94A571e-132PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLD9ZJ840.0D9ZJ84_MALDO; MYBR domain class transcription factor
STRINGXP_008380566.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133672126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.11e-125G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]