PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000808281
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 448aa    MW: 47746.6 Da    PI: 8.8171
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000808281genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.43.7e-114571127
                   --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                   ++ ++C +++rtG+C yG+rC+++H++
  MDP0000808281 45 PGVPNCVYYMRTGFCGYGGRCRYNHPR 71
                   5789*********************96 PP
2zf-CCCH23.21.2e-0791111222
                    -S---SGGGGTS--TTTTT-S CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCk 22 
                    ++++C+++++t tCk+G++Ck
  MDP0000808281  91 GEPICQYYLKTATCKFGASCK 111
                    579*****************8 PP
3zf-CCCH253.3e-081211371127
                    GTS--TTTTT-SS-SSS CS
        zf-CCCH  11 rtGtCkyGdrCkFaHgp 27 
                    +tG+Ck+G +CkF+H++
  MDP0000808281 121 KTGQCKFGITCKFHHPQ 137
                    8**************97 PP
4zf-CCCH36.21e-11271294427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C+++++tG CkyG++C+++H++
  MDP0000808281 271 LECQYYLKTGDCKYGASCRYHHPR 294
                    58********************96 PP
5zf-CCCH36.48.9e-12315339226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    +  +C f++++G+Ck+G++CkF H+
  MDP0000808281 315 GVQPCTFYLQNGQCKFGSTCKFDHP 339
                    6789********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003565.7E-64471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5354472IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-84671IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-64873IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-45071IPR000571Zinc finger, CCCH-type
SMARTSM00356489113IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-591111IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.21198138IPR000571Zinc finger, CCCH-type
SMARTSM003565.6114137IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5121137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352267295IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-5267294IPR000571Zinc finger, CCCH-type
PfamPF006425.2E-9271294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-5273294IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6313340IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76313341IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9315339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6315344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5317340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MDLYGRSPAR NGSNQEWSPA AGETGLEEQM WHLGLTSSES YPERPGVPNC VYYMRTGFCG  60
YGGRCRYNHP RDRAAVVAAV RATGDYPERX GEPICQYYLK TATCKFGASC KARMNAPTIL  120
KTGQCKFGIT CKFHHPQPAG TAIPASAPQF YPSVQSPSVP LAEQYGGAST SLRVARPPLL  180
PGSYVQGAYG PVLIQPGVVP IQGWSPYSAP LSPVLSPGAQ HTVGATSLYG VTQLSSPTHG  240
LARPYTSIPS SVGPSSSNPS EQVFPERPGE LECQYYLKTG DCKYGASCRY HHPRDRTAPR  300
ITCLLSPMGL PLRPGVQPCT FYLQNGQCKF GSTCKFDHPV QTMRYNPSVS SLVDMPVAPY  360
PVGSLLATLA PSSSSSDLRP DLLSASTMDT YSARVPSSGN ASSSSVGLIF SQSGSVSLSD  420
VQLSTQTSSP LSNSRSTRPV GELRRSS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.122110.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386632.20.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A498ISN90.0A0A498ISN9_MALDO; Uncharacterized protein
STRINGXP_008386632.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98334117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-169C3H family protein