PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000804652
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 554aa    MW: 62335.1 Da    PI: 6.0597
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000804652genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.45.8e-1381775471374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l+++L+ cA+av+++dl +aq+++ +l++++s +g+p+qRl ay++e+L ar a+s+s++ykal+++e +   s e l+++++++ev+P++kf+++
  MDP0000804652 177 LKQVLIFCAKAVADNDLLMAQWMMDELRQMVSVSGEPIQRLGAYLLEGLVARKASSGSNIYKALRCKEPA---SCELLSYMHILYEVCPYFKFGYM 269
                    5799*****************************************************************9...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     aN aI ea++ e+ vHiiDf+i+qG QW++L+qa+asRp+gpp++RiTg++++ s   +   l+ +g+rL+k+Ae ++vpfef++ ++ +  d++
  MDP0000804652 270 SANGAIAEAMKDEDSVHIIDFQIGQGSQWVTLIQAFASRPGGPPHIRITGIDDSMSAyaRGGGLNIVGKRLSKLAELVKVPFEFHA-TSMSGCDVQ 364
                    *****************************************************888789999************************.8999***** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    le+L v+pgEala+n++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F  rf+e+l+yy+a+f+s++++lpr+++eri+vE
  MDP0000804652 365 LEHLCVRPGEALAINFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFYPRFVETLNYYTAMFESIDVTLPRDHKERINVE 460
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++l+re+vn++aceg er+erhe l+kWr r+ +aGF+p+pls+ +++++k+ll ++++  yr+ee++g+l+lgWk+r Lv+ +aWr
  MDP0000804652 461 QHCLAREVVNIIACEGVERVERHELLGKWRLRFAMAGFTPYPLSSLVNATIKTLLDNYSD-KYRLEERDGALYLGWKNRDLVASCAWR 547
                    ***********************************************************5.5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.271151528IPR005202Transcription factor GRAS
PfamPF035142.0E-135177547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MQASKEQRIS GMSNQLYYQP IQEVEAYCLP RFQTLDPRLH YNESSQSTHL PLQSFHEHYC  60
TLESSWSNGS YTVYNTPSNV SFSPSGSPMS QQDSHSYLSD QYHSPDQTYS SPMSGSCITD  120
DATDLKYKLK QLETVMLGPD SNXLDNYCXT FPNGASNSLP DEDSWGQIME SISKKDLKQV  180
LIFCAKAVAD NDLLMAQWMM DELRQMVSVS GEPIQRLGAY LLEGLVARKA SSGSNIYKAL  240
RCKEPASCEL LSYMHILYEV CPYFKFGYMS ANGAIAEAMK DEDSVHIIDF QIGQGSQWVT  300
LIQAFASRPG GPPHIRITGI DDSMSAYARG GGLNIVGKRL SKLAELVKVP FEFHATSMSG  360
CDVQLEHLCV RPGEALAINF AFMLHHMPDE SVSTQNHRDR LLRLVKSLSP KVVTLVEQES  420
NTNTAAFYPR FVETLNYYTA MFESIDVTLP RDHKERINVE QHCLAREVVN IIACEGVERV  480
ERHELLGKWR LRFAMAGFTP YPLSSLVNAT IKTLLDNYSD KYRLEERDGA LYLGWKNRDL  540
VASCAWRCKP STN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-6518454626378Protein SCARECROW
5b3h_A6e-6518454625377Protein SCARECROW
5b3h_D6e-6518454625377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.85230.0bud| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008379979.20.0scarecrow-like transcription factor PAT1
RefseqXP_008379980.20.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A498J5T70.0A0A498J5T7_MALDO; Uncharacterized protein
STRINGXP_008379979.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]