PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000804620
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 462aa    MW: 50207.9 Da    PI: 8.4535
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000804620genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.49e-1275101127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++ C +++rtG C yG++C+F+H++
  MDP0000804620  75 PGEPDCIYYLRTGLCGYGSNCRFNHPK 101
                    5789*********************96 PP
2zf-CCCH38.52e-12119143327
                    S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                    ++ C +f++tGtCkyG++CkF+H++
  MDP0000804620 119 QPDCGYFLKTGTCKYGSTCKFHHPR 143
                    789********************96 PP
3zf-CCCH382.7e-12166188527
                    --SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                     C++++rtG Ck+G+ CkF+H++
  MDP0000804620 166 SCPYYMRTGSCKFGPACKFHHPQ 188
                    6********************97 PP
4zf-CCCH37.93e-12304329227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                    ++++Cr+f+ tGtCkyG  Ck++H++
  MDP0000804620 304 DQPECRYFMNTGTCKYGIDCKYHHPK 329
                    689*********************96 PP
5zf-CCCH31.72.7e-10346371126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    ++++ C++f  +G+CkyG++C+F H+
  MDP0000804620 346 PGQPACSYFIMYGICKYGPTCRFDHP 371
                    57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.52674102IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-674101IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-976101IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-579101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-48099IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.793116144IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6116143IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-10119143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-6120145IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-5122143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-6160189IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.371162189IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-5163188IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10165188IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5166187IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.76302330IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5302329IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6304331IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9304329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-5308329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77345373IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5345372IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6347371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5349374IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MSLVGEAEKS RGKQHKGRVH ANSVVPPMPD ARQAQKNAVP NQSDGNVEDA FWRLTINDNQ  60
DRGGVAQANS YPDRPGEPDC IYYLRTGLCG YGSNCRFNHP KYASQGNQYN GELPERVGQP  120
DCGYFLKTGT CKYGSTCKFH HPRDRRGAGP VLFNILGLPM HQEEKSCPYY MRTGSCKFGP  180
ACKFHHPQPQ SVGTVLPAFG SASSAVVPTS GVPYVGGVSA WSFPRAPYVS GQRLQTPQSY  240
MPVVLPPQGI VPAHGWNTYV GNMSPVSSTG ILGSNLTYNS RTQGESASNG QVHLSSPXLP  300
QRPDQPECRY FMNTGTCKYG IDCKYHHPKE RITESATTSL GLPSRPGQPA CSYFIMYGIC  360
KYGPTCRFDH PYMEQSASYN FGMQAMPVLD SSLLSYPRGW PVAHGLETSP SIPSKSPDGV  420
KKPMSNNYQN SNTKISEDSP EQVGSLPASP SSPEPVQEQS G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113131e-116bud| fruit
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008353591.20.0zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD91e-113C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A498HF440.0A0A498HF44_MALDO; Uncharacterized protein
STRINGXP_008342144.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-116C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]