PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000804605 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LSD | ||||||||
Protein Properties | Length: 153aa MW: 15834.5 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.4e-13 | 35 | 59 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V MDP0000804605 35 CSGCRNLLLYPVGATSVCCAVCNAV 59 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5.2e-15 | 74 | 98 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV MDP0000804605 74 CGGCHTLLMYIRGATSVQCSCCHTV 98 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.8e-13 | 112 | 136 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V MDP0000804605 112 CGNCRMLLMYQYGARSVKCAVCNFV 136 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.90.10.10 | 9.2E-4 | 30 | 133 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.1E-12 | 32 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.5E-10 | 35 | 59 | IPR005735 | Zinc finger, LSD1-type |
SuperFamily | SSF48695 | 6.28E-5 | 35 | 133 | IPR011031 | Multihaem cytochrome |
TIGRFAMs | TIGR01053 | 9.4E-15 | 71 | 100 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-12 | 74 | 98 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.3E-12 | 109 | 139 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 112 | 136 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPVPLAPYPT PPPAPPPPPP YTSPPANGAQ SQLVCSGCRN LLLYPVGATS VCCAVCNAVT 60 AVPPPGTEMA QLVCGGCHTL LMYIRGATSV QCSCCHTVNL ALEANQVAHV NCGNCRMLLM 120 YQYGARSVKC AVCNFVTSVG VPANTPEQKF NN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.9648 | 0.0 | bud| fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008373559.1 | 1e-104 | protein LOL1 | ||||
Refseq | XP_017188155.1 | 1e-104 | protein LOL1 | ||||
Refseq | XP_028960279.1 | 1e-104 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-81 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A498JSX6 | 3e-94 | A0A498JSX6_MALDO; Uncharacterized protein | ||||
STRING | XP_008373559.1 | 1e-103 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 5e-66 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000804605 |
Publications ? help Back to Top | |||
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