PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000804580
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 312aa    MW: 34122.2 Da    PI: 9.4421
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000804580genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.82e-31103159259
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                    ++vrY+eClkNhAas Ggh++DGCgEfmp  g+e t+ +lkCaAC+CHRnFHR+e + 
  MDP0000804580 103 SRVRYRECLKNHAASSGGHVLDGCGEFMPG-GDEDTPGSLKCAACECHRNFHRKEIDG 159
                    689**************************9.7777*******************9875 PP
2Homeobox15.23.8e-05248308157
                    TT--SS--HHHHHHHHHHHH....HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   1 rrkRttftkeqleeLeelFe....knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    +r Rt+f++eq e + e+ e    + ++ +++e e+L +++g++ ++ kvW +N ++ +kk
  MDP0000804580 248 KRFRTKFSQEQKEKMTEVAEklgwRIQKHDEQEVEKLCSEVGIKRQVFKVWMHNNKQAMKK 308
                    789**************999776668999****************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-2199164IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.2E-29105157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-29106157IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.714107156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.13E-18241308IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-30241309IPR009057Homeodomain-like
PROSITE profilePS500719.329245309IPR001356Homeobox domain
TIGRFAMsTIGR015657.2E-27247304IPR006455Homeodomain, ZF-HD class
CDDcd000863.53E-4248310No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MELRGQDKVI GRMPSTLTYT PPPHRDSSSS KLSSSPDFPS AGHHGNNTTL FTHPPHQTLD  60
RSRRDPDPTP VIVTPSAATT IASGSNFKAP PAPPQPQPST AASRVRYREC LKNHAASSGG  120
HVLDGCGEFM PGGDEDTPGS LKCAACECHR NFHRKEIDGD HVSNNYYVIN QQHNSRRDSA  180
ITRLPVLIST PPSLPVHHSA ARGPSPAMMM TFGSSGGVAA ESSSEDLNMN NNLFGGANYA  240
ADAQGSKKRF RTKFSQEQKE KMTEVAEKLG WRIQKHDEQE VEKLCSEVGI KRQVFKVWMH  300
NNKQAMKKKQ M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-232483031873ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves, stems, flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392268.10.0zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW72e-68ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A251NBY41e-112A0A251NBY4_PRUPE; Uncharacterized protein
TrEMBLA0A251NEX71e-112A0A251NEX7_PRUPE; Uncharacterized protein
TrEMBLM5VV111e-112M5VV11_PRUPE; Uncharacterized protein
STRINGXP_008392268.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-60homeobox protein 24