PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000799893
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NF-X1
Protein Properties Length: 521aa    MW: 57698.7 Da    PI: 8.2786
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000799893genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.12.8e-06406422319
       zf-NF-X1   3 kHkCqklCHeGpCppCp 19 
                    +H+C+++CH GpC+pC+
  MDP0000799893 406 RHRCERTCHVGPCDPCQ 422
                    8***************6 PP
2zf-NF-X121.26.2e-07468485118
       zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                    CG+H+C++ CH+GpC+ C
  MDP0000799893 468 CGNHSCSEVCHPGPCGDC 485
                    ****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500168.787234295IPR019787Zinc finger, PHD-finger
SuperFamilySSF578505.12E-7236297No hitNo description
PROSITE patternPS013590237292IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.391237293IPR001841Zinc finger, RING-type
CDDcd060081.12E-5326387No hitNo description
SMARTSM004380.023349367IPR000967Zinc finger, NF-X1-type
PfamPF014223.6351366IPR000967Zinc finger, NF-X1-type
CDDcd060085.33E-11394442No hitNo description
SMARTSM004385.8E-4404423IPR000967Zinc finger, NF-X1-type
PfamPF014221.4E-4406421IPR000967Zinc finger, NF-X1-type
CDDcd060081.85E-11458501No hitNo description
SMARTSM004384.4E-5468487IPR000967Zinc finger, NF-X1-type
PfamPF014225.5E-5468485IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 521 aa     Download sequence    Send to blast
MLESLSLIGI RFFQCVNSFG EFFLSDSIAY FGTLSENRRF ESLVVSQNMS SHVRNDRRDR  60
SRFPAQPTQP SRREWVPRGS NPAIATAAVN PPPQVNPNNL NGNVSQPNPR FNPNNQNGNV  120
TQPNLRFNPN NLNGNVSQPT PRFNLDNPNS NVSQPTPRFN LDNPNSNVSQ PNHSSVPSEI  180
RPHRGGNNGV RGQGRPVNHR RERGRNDNQE EKGLKDSNLP QLVQEIQDKL TKGTVECMIC  240
YDMVRRSAPV WSCSSCYSIF HLXCIKKWAR APTSIDMSAG KNQGFNWRCP GCQSVQLTSS  300
KEIRYDCFCG KRTDPPSDLY LTPHSCGEPC GKQLEREVPG KGVSKDDLCP HVCVLQCHPG  360
PCPPCKAFAP PRLCPCGKKI ITTRCSDRTS VLTCGQHCNK LLDCWRHRCE RTCHVGPCDP  420
CQVLVDASCF CXKKVEVVLC GDMTVKGEVK AEDGVFSCSS TCGKMLSCGN HSCSEVCHPG  480
PCGDCNLMPS KIKTCHCGKT SLQEERQSCL DPIPTCSQLC X
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018503787.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like
SwissprotQ9SY591e-170NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A498I5I70.0A0A498I5I7_MALDO; Uncharacterized protein
STRINGXP_009360168.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.11e-167NF-X-like 1