PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000794439 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 321aa MW: 35309.6 Da PI: 7.8278 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.8 | 5.9e-30 | 166 | 225 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs ed+++++ tYegeHnh+ MDP0000794439 166 VKDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVEDQSILVATYEGEHNHP 225 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.5E-29 | 156 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.452 | 161 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-25 | 163 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.0E-34 | 166 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 167 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009617 | Biological Process | response to bacterium | ||||
GO:0009620 | Biological Process | response to fungus | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 321 aa Download sequence Send to blast |
MDYSAANDDD ASLDLNSMPL RLFDDTPMIK KEVHSKILID FGRQLSPKEE SGALLEELHR 60 VSAENKKLTE MLTVMGENYN ALRSQLLEYM SKNPEKELSP ISKKRKSESS NNNTNSNNIM 120 NGAVNGNSES SSSDGESYKK PREEIVKAKI SRACVQTEAS DTSLVVKDGY QWRKYGQKVT 180 RDNPCPRAYF KCSFAPSCPV KKKVQRSVED QSILVATYEG EHNHPNPSQI EATSDSNHCV 240 AIGSVPCSTS LGSTGPTITL DLTKSKSSTA DAKSTKIRTE TPEVRKFLVE QMASSLTKDP 300 DFTKALAAAI SGRILQHNTY * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-19 | 165 | 227 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mdo.13632 | 0.0 | bud| fruit| leaf| root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX112912 | 0.0 | JX112912.1 Malus hupehensis WRKY transcription factor 40a mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008392469.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-97 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A498IYN8 | 0.0 | A0A498IYN8_MALDO; Uncharacterized protein | ||||
STRING | XP_008392469.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-89 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000794439 |