PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000794101 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24537.5 Da PI: 7.5421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.5 | 3.2e-31 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+p++ p++q++++ +++k+FG+s +l++++a+pe++r+++++sl++eA+ r +Pv+Gavg+++++++q++q++ MDP0000794101 2 SCNGCRVLRKGCSETCILRPCLhwidsPQAQANATLFLAKFFGRSDLLSFVSAVPETQRPALFQSLLFEACGRSVNPVNGAVGLLSSGNWQVCQSA 97 6*********************************************************************************************** PP DUF260 92 aelal 96 +e++l MDP0000794101 98 VETVL 102 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.872 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLHWIDSPQ AQANATLFLA KFFGRSDLLS FVSAVPETQR 60 PALFQSLLFE ACGRSVNPVN GAVGLLSSGN WQVCQSAVET VLSGGVLRPL PAFTTPSLDE 120 SSDTFSRGTC TXQNRYYQSV PSASAYYGEE RSQPFEPAGL SLKPNLAAGE RGRGRGMRSY 180 ISAAMDQRLR DTVSFDSEES VMTTTTTRCL ESGGDLKDCK LLNLFV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.23857 | 4e-69 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008393744.2 | 1e-165 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SN23 | 5e-62 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A498HRD9 | 1e-164 | A0A498HRD9_MALDO; Uncharacterized protein | ||||
STRING | XP_008393744.1 | 1e-165 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 4e-65 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000794101 |