PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000793615
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 684aa    MW: 75022.8 Da    PI: 5.7658
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000793615genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.4e-1302986671374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv+lL++c+ea+  ++ +++++++a+l elasp+g+++ R  ay+teAL+ r++r +++++++ +p++ +++++++ +  l+l+++vsPi+kf h+
  MDP0000793615 298 LVSLLTACVEAIGLKNIAAINHFIAKLGELASPKGSAISRXSAYYTEALSLRVTRLWPHVFQINAPRKFDRRDEDSGI-ELRLLNQVSPIPKFVHF 392
                    6899*****************************************************************976666665.569************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+L sR+++p ++RiTg+g+    sk+el+etg+rLa fA +l++pfef++ v++rled++l+
  MDP0000793615 393 TSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLVSRTNPPSHVRITGIGE----SKQELNETGDRLAGFAGALNLPFEFHP-VVDRLEDVRLW 483
                    *****************************************************....***************************.7********** PP

           GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                    +L+vk++E++aVn+v+qlh++l +++  +   +++L l++s++P++v ++eqea+hn++++ +r++++l+yysa+fds+ ++lp es++rikvE++
  MDP0000793615 484 MLHVKEHESVAVNCVFQLHKTLYDTTGGAL--RDFLGLIRSTNPTLVLMAEQEAEHNESKLETRVSNSLKYYSAIFDSIGSSLPLESQARIKVEEM 577
                    **********************77765555..89************************************************************** PP

           GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.....sgslvlgWkdrpLvsvSaWr 374
                     +++ei+n++aceg++r erhe++ekWr+ +e+ GF+ v ++e+++ q + ll++++s+ y+v+++      ++l+l W+d+pL++vSaW+
  MDP0000793615 578 -FAQEIRNIIACEGSDRLERHESFEKWRKLMEQEGFRCVGITEREMLQSQFLLKMYASENYTVKKQekngaAEALTLSWMDQPLYTVSAWT 667
                    .********************************************************999****765666667889**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.482272642IPR005202Transcription factor GRAS
PfamPF035143.2E-127298667IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE AAAQLQACSF QLPSMSTQRL DLPCSFPRKD TSRSQPIRPV  60
GLSVEKSIDS KAGGCSLKQS IRLPPLATSG PVTATAAFVE TGKENHEQFW GEKKRGKRFA  120
DPVDDDESFR KRAKRKRGCG DNGGDGEGGG GLSLGQLGGG NFWFQPGFHL PPTTTQPPFS  180
LTCSGDEERV CYVPAEEISQ PLPLSNNPWL DSIVTEITDL GKKDGGGEAS RGLVGEGSAG  240
SSTSSESQSL ALRVNXSASE HDTGNGTRNP FVPHGGAGVV AEEEEDDESE AEHLGFELVS  300
LLTACVEAIG LKNIAAINHF IAKLGELASP KGSAISRXSA YYTEALSLRV TRLWPHVFQI  360
NAPRKFDRRD EDSGIELRLL NQVSPIPKFV HFTSNEILLR AFEGKDRVHI IDFDIKQGLQ  420
WPSLFQSLVS RTNPPSHVRI TGIGESKQEL NETGDRLAGF AGALNLPFEF HPVVDRLEDV  480
RLWMLHVKEH ESVAVNCVFQ LHKTLYDTTG GALRDFLGLI RSTNPTLVLM AEQEAEHNES  540
KLETRVSNSL KYYSAIFDSI GSSLPLESQA RIKVEEMFAQ EIRNIIACEG SDRLERHESF  600
EKWRKLMEQE GFRCVGITER EMLQSQFLLK MYASENYTVK KQEKNGAAEA LTLSWMDQPL  660
YTVSAWTPVD AAAGSSSSFS QPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A6e-7330566825379Protein SCARECROW
5b3h_D6e-7330566825379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.161610.0bud| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and sepals. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008369471.20.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A498K6Q10.0A0A498K6Q1_MALDO; Uncharacterized protein
STRINGXP_008369471.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein