PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000790705
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 203aa    MW: 22045.3 Da    PI: 7.8407
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000790705genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer87.31.6e-271162458
    ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                    +Y+eCl+NhAaslG++a+DGCgEf+ +   ++++ +l+CaACgCHRnFHRr + 
  MDP0000790705 11 DVYRECLRNHAASLGSYATDGCGEFTVD---HASPGGLQCAACGCHRNFHRRVTY 62
                   58************************98...5689*****************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-231261IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-161359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.8321360IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-221359IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.52E-15112182IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-28115183IPR009057Homeodomain-like
TIGRFAMsTIGR015656.7E-29125183IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MEGDHDPNTN DVYRECLRNH AASLGSYATD GCGEFTVDHA SPGGLQCAAC GCHRNFHRRV  60
TYAATSSQAA GGGRSGHLQH HVIMSCSSRG RDPAENIITT QDQLIDYNAG GGGSPDSGER  120
MSSEKKRFRT KFTAEQKEKM LAFAEKLGWK LLRKDLEDEI ETFCRSVGVT RQVFKVWMHN  180
HKNLSSSSTS ASTGNASSLT TQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-211261881879ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.131050.0bud| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008375099.11e-152zinc-finger homeodomain protein 10-like
TrEMBLA0A314UWY91e-107A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRINGXP_008375099.11e-151(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79822844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.16e-41homeobox protein 22