PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000789571

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 216aa MW: 24758.9 Da PI: 6.527

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000789571	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	60	113	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t+eq++ Le F +++++ e++ +LA+ lgL+ rqV vWFqNrRa++k+ MDP0000789571 60 KRKLTAEQVDLLELNFGNEHKLESEKKDRLASDLGLDPRQVAVWFQNRRARWKN 113 5689************************************************95 PP
2	HD-ZIP_I/II	114.4	6.9e-37	59	150	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+l++eqv lLE +F +e+kLe+e+K +la++Lgl+prqvavWFqnrRAR+k+k+lE++y++Lk++ + ++e++rLe+e+++L+++l+e MDP0000789571 59 KKRKLTAEQVDLLELNFGNEHKLESEKKDRLASDLGLDPRQVAVWFQNRRARWKNKKLEEEYSTLKKENEITVAEKCRLESEMSKLKDQLSE 150 9****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	2.8E-17	57	118	IPR001356	Homeobox domain
CDD	cd00086	3.79E-15	59	115	No hit	No description
SuperFamily	SSF46689	2.74E-17	59	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.082	59	114	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-16	60	113	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-20	61	121	IPR009057	Homeodomain-like
PRINTS	PR00031	3.3E-5	85	94	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	89	112	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.3E-5	94	110	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTTNSHQIVE DDHQMLLISH LYSASDVYTQ IVPPQGASKP ARRRRRKSKG GEAGGVGLKK 60 RKLTAEQVDL LELNFGNEHK LESEKKDRLA SDLGLDPRQV AVWFQNRRAR WKNKKLEEEY 120 STLKKENEIT VAEKCRLESE MSKLKDQLSE AEKEIQRLLQ RVDHGGSSNS PSSSLSMEAI 180 DPPFLGEFGV EEYDDVFYMP QNNYIHGMEW MNLYM*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	60	RRRRKSKGGEAGGVGLKKR
2	43	48	RRRKSK
3	44	61	RRKSKGGEAGGVGLKKRK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008338163.1	1e-160	homeobox-leucine zipper protein ATHB-40-like
Swissprot	O23208	3e-75	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	A0A498I227	1e-159	A0A498I227_MALDO; Uncharacterized protein
STRING	XP_008338163.1	1e-160	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4789	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	2e-68	homeobox protein 40

Link Out ? help Back to Top
Phytozome	MDP0000789571

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]