PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000787720
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ZF-HD
Protein Properties Length: 275aa    MW: 29302.7 Da    PI: 8.0726
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000787720genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer94.77.5e-3058112257
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                    + vrY+eClkNhA+ +Ggha+DGC+ f+++ g egt +alkCaAC+CHRnFHR+e 
  MDP0000787720  58 KVVRYRECLKNHAVGIGGHALDGCCKFLAA-GPEGTLDALKCAACNCHRNFHRKEG 112
                    579**************************9.999********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.8E-2760111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-2561111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2061113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.27662111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.94E-19200272IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-31202273IPR009057Homeodomain-like
TIGRFAMsTIGR015654.4E-25211267IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEFNDQEDHE EEMEMTANYD SLGNSAGGRV KMSSSGPDGL ALAAAAAAAT QQQQQPRKVV  60
RYRECLKNHA VGIGGHALDG CCKFLAAGPE GTLDALKCAA CNCHRNFHRK EGDPPGHGLG  120
VITDACGQLV PHHGQQHHPQ FSPYYRTPAG FLHVAAHHRL LALPSTSGGG GTHSGGQEQD  180
DDVSNPSGGG GGGSGGLGMG MGMHGTASSG KKRFRTKFSQ EQKERMLSLA ERLGWRIQKQ  240
DEPAVQQFCN ETGVNRHVLK VWMHNNKHTL GKKP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-252122691875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.245794e-82fruit
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008385682.10.0zinc-finger homeodomain protein 1-like isoform X3
SwissprotQ6YXH55e-77ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLA0A498KI590.0A0A498KI59_MALDO; Uncharacterized protein
STRINGXP_008385680.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-58homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]