PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000783818
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 349aa    MW: 38569.7 Da    PI: 5.0642
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000783818genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-19122172155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++GVr+++ +g+W+AeIrdp     r  r +lg+f+taeeAa  +++a+ +l+g
  MDP0000783818 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTFDTAEEAAVVYDNAAIQLRG 172
                    59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.41E-32122180No hitNo description
SMARTSM003801.1E-37123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-30123180IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-21123180IPR016177DNA-binding domain
PROSITE profilePS5103223.578123180IPR001471AP2/ERF domain
PfamPF008473.9E-11123172IPR001471AP2/ERF domain
PRINTSPR003672.9E-10124135IPR001471AP2/ERF domain
PRINTSPR003672.9E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNRPAVKYTQ HRRHTTMVAN SAEADEFESV RPRVVRISVT DGNATDSSSD DEAKESSFCG  60
TRHRVKRFVN EITIESCSNR DTDSAVWRSR MSRTGRKRPS GKSKGPASGR RDLKAVAAPA  120
GKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTFDTAEEAA VVYDNAAIQL RGPDALTNFA  180
PPPPAISLPD VKPEVSSGFY SGDGSHNHLC SPTSVLRCPS PSNEEAESPC PKQSPEVIEV  240
RNVRENSSVS KSLSEFSDYT SFETFIPNDI FNFETSIPDF LEETSLRDDI TDFGNFGISK  300
EGMTDFGNLG DLFVDSVQDF GFGSTPWCTE DYFQDIGDLF SSDPLVAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20121179362ATERF1
3gcc_A6e-20121179362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4666491e-39AM466649.2 Vitis vinifera contig VV78X085330.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008392454.10.0ethylene-responsive transcription factor CRF2
TrEMBLA0A498JPC10.0A0A498JPC1_MALDO; Uncharacterized protein
STRINGXP_008392454.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.29e-64cytokinin response factor 2