PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000782323
Common NameCOL9
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family CO-like
Protein Properties Length: 410aa    MW: 44503.8 Da    PI: 6.5631
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000782323genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.94.4e-084789541
       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                   +C++++++++   C++ ++ lC++C   +H+       H++++
  MDP0000782323 47 ICERCNSQPALVRCTEERVSLCQNCDWMGHQAstsasgHKRQT 89
                   8*****************************7788888898765 PP
2CCT58.62.2e-20350393144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R +a++RYkeK+k RkFeK++rY+sRKa+A+ R+RvKGrF k+ 
  MDP0000782323 350 RSNAVMRYKEKKKARKFEKRVRYASRKARADVRKRVKGRFIKAG 393
                    899*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501198.66147IPR000315B-box-type zinc finger
SMARTSM003362.7E-5447IPR000315B-box-type zinc finger
CDDcd000212.39E-4435No hitNo description
PROSITE profilePS501198.9444390IPR000315B-box-type zinc finger
CDDcd000211.55E-54790No hitNo description
SMARTSM003360.164890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.269350392IPR010402CCT domain
PfamPF062031.7E-15350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MGYMCDYCQV QRSMVHCRSD AACLCLSCDR NVHSANALSR RHLRTLICER CNSQPALVRC  60
TEERVSLCQN CDWMGHQAST SASGHKRQTL NCYSGCPSSA ELSSIWSFVS DLPSNGESAC  120
EQEMGLMSIA ENSTRSEWSQ TESNTRQSAS GADEVNPAHS MEKSGILVGS SSVPERSHAR  180
HVVGQLSGSV NASLPKLYSH GGKGTGLPED DDLYDDLDMD EMELNLENYD ELFGVSLNHS  240
EELFKNGGID SLFGAKNVSR DCQDAVAADG SSFGLGNAPQ PACSNAASAD SVMSTKTDPV  300
ICFPAKQAHS NLSFSGXTGE SSAGDCQDCG ASSTPWXPPC PESSMQSANR SNAVMRYKEK  360
KKARKFEKRV RYASRKARAD VRKRVKGRFI KAGEAYDYDP LNQARTRSY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.20370.0fruit| leaf| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001280762.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-151COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLD9ZIX50.0D9ZIX5_MALDO; COL domain class transcription factor
STRINGXP_008342258.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43623353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-113CONSTANS-like 9