PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MDP0000778140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36248.6 Da PI: 5.3084 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 55 | 103 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g MDP0000778140 55 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAALSMKG 103 56******.**********965...5************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.6E-34 | 54 | 117 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.943 | 54 | 111 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.19E-30 | 54 | 110 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.9E-29 | 55 | 111 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-20 | 55 | 112 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.5E-8 | 55 | 66 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.0E-12 | 57 | 103 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.5E-8 | 77 | 93 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MSMSTSQALE KPFEAFEQGQ VQVDIAAVLQ RSTLTPSSQS GERRGRRKQA EPGRFLGVRR 60 RPWGRYAAEI RDPSTKERHW LGTFDTAEEA ALAYDRAALS MKGSQARTNF IYSDNTTFHS 120 LLSPFDVQTL LPQQSQFFTT QTAKQQLTNQ NSPPHHSNMF QSDQTQFQNP NNIRSSSSAH 180 HKDDECFFFS GNSSNSNSGY LACIVPDSCL RPPSDNDDPP NYTNSKALNI DQNCSFANPN 240 NSTSATLPLD VMNVQAALEA PNNNNGDHQI SCFDGFSHGF WDNQQPWEFN PMMTEDGCMG 300 ALYPIVENSS AYGSSSSFSC FGHSLF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-20 | 45 | 110 | 5 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in the early stages of lateral root primordia formation (PubMed:17630277). Expressed in early floral meristem (stage 1 to 2) (PubMed:19482972). {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_028946811.1 | 0.0 | ethylene-responsive transcription factor ERF086-like | ||||
Swissprot | Q6J9Q2 | 3e-56 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A498HSB3 | 0.0 | A0A498HSB3_MALDO; Uncharacterized protein | ||||
STRING | XP_009352329.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5784 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G18560.1 | 1e-40 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | MDP0000778140 |
Publications ? help Back to Top | |||
---|---|---|---|
|