PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000774664 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 108aa MW: 11876.5 Da PI: 11.6791 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 45.1 | 2.9e-14 | 6 | 65 | 17 | 76 |
DUF260 17 vlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 +lapyfp++ p + n+h+lFG+ ++ +l++alp + r+ ms+++ eA+ ra++Pv a MDP0000774664 6 PLAPYFPSNYPTNSHNAHELFGVGRLEQLVTALPLHLRNPXMSTIFVEANQRAKNPVGAA 65 58******************************************************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 10.042 | 1 | 90 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.9E-11 | 6 | 65 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MHRGLPLAPY FPSNYPTNSH NAHELFGVGR LEQLVTALPL HLRNPXMSTI FVEANQRAKN 60 PVGAARPLSG RYSVPSTSTR RNLTACATSL NCAPAAAMLW RKLWRTF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009365511.1 | 2e-23 | PREDICTED: LOB domain-containing protein 25-like | ||||
TrEMBL | A0A498HVN8 | 6e-21 | A0A498HVN8_MALDO; Uncharacterized protein | ||||
STRING | XP_009365511.1 | 8e-23 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF22907 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 4e-11 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000774664 |