PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000773970 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 252aa MW: 28454.2 Da PI: 10.1763 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.6 | 1.2e-32 | 13 | 67 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k rlrWt+eLH+rFveav++LGG+++AtPk il++m+v gLt++h+kSHLQkYR+ MDP0000773970 13 KDRLRWTQELHDRFVEAVTKLGGPDRATPKGILKAMSVSGLTIYHIKSHLQKYRI 67 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.561 | 10 | 70 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-30 | 11 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.53E-18 | 12 | 67 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.5E-26 | 13 | 68 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.4E-9 | 15 | 66 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGSRRSESSA ANKDRLRWTQ ELHDRFVEAV TKLGGPDRAT PKGILKAMSV SGLTIYHIKS 60 HLQKYRISKF IPESTNKGKL QRKNITEMLP NFGTTSAAQL NEAFKIMQIQ VQKNLQHKLE 120 SQGRFLERYS AERQNTNKNR PIVITKPRKA PLSKTSLPSL CDHSESNAKD FASDSEPDRS 180 ETQSSAEQFQ TLKKLRLHHH QNDPNVQFAL NSELYTAQSH SLLLPHEEDH ISFPWNFAAC 240 SSPLAVSSCF L* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-22 | 13 | 70 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008370148.1 | 0.0 | myb family transcription factor PHL7-like | ||||
TrEMBL | A0A498K661 | 0.0 | A0A498K661_MALDO; Uncharacterized protein | ||||
STRING | XP_008370148.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10659 | 25 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 8e-47 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000773970 |