PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000768369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 186aa MW: 20613.8 Da PI: 9.9902 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.7 | 0.0017 | 42 | 64 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H MDP0000768369 42 FECKTCNRKFTSFQALGGHKASH 64 89**********99998888877 PP | |||||||
2 | zf-C2H2 | 10.7 | 0.0016 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg F L H+r+H MDP0000768369 99 HKCSICGLEFGMGQALGGHMRRH 121 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.5E-11 | 41 | 66 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.51E-8 | 41 | 64 | No hit | No description |
PROSITE profile | PS50157 | 10.367 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.51E-8 | 94 | 121 | No hit | No description |
Pfam | PF13912 | 3.7E-11 | 98 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.411 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MKRDMRGEES GFGLKGLDMA KCLMLLSCGM ETKFKTCSND VFECKTCNRK FTSFQALGGH 60 KASHKRSRIL MSRDDEXCKD EREKGSDKSM VMNKKAKTHK CSICGLEFGM GQALGGHMRR 120 HRASNMDMAG FSYAPSAVTS KIPVLTRSSS KRVMSLEMDL NLTPLENDLK LLFGKMAPKV 180 DAFVS* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:9132053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008345441.2 | 1e-132 | zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-44 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A498K4T0 | 1e-125 | A0A498K4T0_MALDO; Uncharacterized protein | ||||
STRING | XP_008345441.1 | 1e-132 | (Malus domestica) | ||||
STRING | XP_008369844.1 | 1e-132 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-47 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000768369 |